RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 MIB2Q96AX9 1013 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 KCNK15Q9H427 330 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 HRH3Q9Y5N1 445 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 KIF26BQ2KJY2 2108 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 DOK2O60496 412 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 KHDRBS3O75525 346 aaKnown RBP17.41■□□□□ 0.38
COL9A3-201ENST00000343916 KRT33AO76009 404 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 HEXBP07686 556 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 FMODQ06828 376 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 MFGE8Q08431 387 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-201ENST00000343916 NKAIN1Q4KMZ8 207 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 YOD1Q5VVQ6 348 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-201ENST00000343916 OR11G2Q8NGC1 345 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 FCAMRQ8WWV6 532 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 C7orf50Q9BRJ6 194 aaKnown RBP17.41■□□□□ 0.38
COL9A3-201ENST00000343916 VSX1Q9NZR4 365 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-201ENST00000343916 SRPK3Q9UPE1 567 aa17.41■□□□□ 0.38
COL9A3-201ENST00000343916 COA3Q9Y2R0 106 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-201ENST00000343916 PHYHO14832 338 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 SLC26A5P58743 744 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 SLC18B1Q6NT16 456 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 ZNF679Q8IYX0 411 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 NXPE2Q96DL1 559 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 OR2M2Q96R28 347 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 TGIF2Q9GZN2 237 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 A0A1W2PQM1 296 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 FTCDNL1E5RQL4 147 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 HPXP02790 462 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 RAB40ALP0C0E4 278 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 DCTDP32321 178 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 RGS19P49795 217 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 OR7A5Q15622 319 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 NFAM1Q8NET5 270 aaPredicted RBP17.4■□□□□ 0.38
COL9A3-201ENST00000343916 OR51D1Q8NGF3 324 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 ZNF431Q8TF32 576 aaPredicted RBP17.4■□□□□ 0.38
COL9A3-201ENST00000343916 RAB40AQ8WXH6 277 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 TTC9Q92623 222 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 MCHR2Q969V1 340 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 C8orf44Q96CB5 159 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 TRAF4Q9BUZ4 470 aaPredicted RBP17.4■□□□□ 0.38
COL9A3-201ENST00000343916 SEMA4CQ9C0C4 833 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 PLEKHA1Q9HB21 404 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 MGAT4AQ9UM21 535 aa17.4■□□□□ 0.38
COL9A3-201ENST00000343916 GPR171O14626 319 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 RAF1P04049 648 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 TAS2R20P59543 309 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 EIF2B1Q14232 305 aaKnown RBP17.39■□□□□ 0.37
COL9A3-201ENST00000343916 FAM69BQ5VUD6 431 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 MAMSTRQ6ZN01 415 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 KRT77Q7Z794 578 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 SLC38A6Q8IZM9 456 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 OR56B4Q8NH76 319 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 ABHD6Q9BV23 337 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 OR10A4Q9H209 315 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 ZFP64Q9NPA5 681 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 TRBV11-1A0A0K0K1C0 115 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 MS4A18H0YCH9 400 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 H3BML4 177 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 SCRG1O75711 98 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 ZNF432O94892 652 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 EFNB2P52799 333 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 PUDPQ08623 228 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 MS4A18Q3C1V0 323 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 ESCO2Q56NI9 601 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 ZBTB37Q5TC79 503 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 CD276Q5ZPR3 534 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 ASPHD2Q6ICH7 369 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 PAPD4Q6PIY7 484 aaKnown RBP17.39■□□□□ 0.37
COL9A3-201ENST00000343916 STK35Q8TDR2 534 aa17.39■□□□□ 0.37
COL9A3-201ENST00000343916 MED12Q93074 2177 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 TMEM200CA6NKL6 621 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 OR2T1O43869 369 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 ALOX12BO75342 701 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 ITGA5P08648 1049 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 IFNGR1P15260 489 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 DHPSP49366 369 aaPredicted RBP17.38■□□□□ 0.37
COL9A3-201ENST00000343916 VEGFCP49767 419 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 OR11H4Q8NGC9 324 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 RNF128Q8TEB7 428 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 TMEM234Q8WY98 164 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 MED29Q9NX70 200 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 MRPL39Q9NYK5 338 aaKnown RBP17.38■□□□□ 0.37
COL9A3-201ENST00000343916 AKAP7Q9P0M2 348 aaPredicted RBP17.38■□□□□ 0.37
COL9A3-201ENST00000343916 STEAP1Q9UHE8 339 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 IGLV3-12A0A075B6K2 115 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 SSNA1O43805 119 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 ANXA3P12429 323 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 CSRP1P21291 193 aaKnown RBP17.38■□□□□ 0.37
COL9A3-201ENST00000343916 GLO1Q04760 184 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 TOR2AQ5JU69 321 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 TEX30Q5JUR7 227 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 NDUFAF7Q7L592 441 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 ZNF227Q86WZ6 799 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 MRI1Q9BV20 369 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 FBXL3Q9UKT7 428 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 ING4Q9UNL4 249 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 LRP12Q9Y561 859 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 ETV7Q9Y603 341 aa17.38■□□□□ 0.37
COL9A3-201ENST00000343916 IGKV1D-43A0A0B4J1Z2 117 aa17.37■□□□□ 0.37
COL9A3-201ENST00000343916 A0A1B0GTQ1 180 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms