RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DCDC2BA2VCK2 349 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 ARPC1BO15143 372 aaKnown RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 KRT33AO76009 404 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 PTH2RP49190 550 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 CCR9P51686 369 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 PUDPQ08623 228 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 CARD17Q5XLA6 110 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 PLPP5Q8NEB5 264 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 FCAMRQ8WWV6 532 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 OR8B4Q96RC9 309 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 SEC22CQ9BRL7 303 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 ZMAT3Q9HA38 289 aaKnown RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 COLQQ9Y215 455 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 NUBP2Q9Y5Y2 271 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 DCHS1Q96JQ0 3298 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 IGHV5-10-1A0A0J9YXX1 117 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 LMX1BO60663 402 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 NPIPB7O75200 414 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 MT-ATP6P00846 226 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 C1QBP02746 253 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 MAPK3P27361 379 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 SFTPDP35247 375 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 HLA-BQ31612 363 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 CCDC157Q569K6 752 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 SLC25A25Q6KCM7 469 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 OR8S1Q8NH09 359 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 MAFAQ8NHW3 353 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 ZNF519Q8TB69 540 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 C20orf85Q9H1P6 137 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 METTL7AQ9H8H3 244 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 KLHL9Q9P2J3 617 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 CDV3Q9UKY7 258 aaKnown RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 SRPK3Q9UPE1 567 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 LRP12Q9Y561 859 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 PHF3Q92576 2039 aaKnown RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 CPAMD8Q8IZJ3 1885 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 IGLV1-36A0A0B4J1U3 117 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 TMEM212A6NML5 194 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 G3V3Y1 287 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 TRIM3O75382 744 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 DXOO77932 396 aaKnown RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 ZNF823P16415 610 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 EPHA8P29322 1005 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 TAS2R20P59543 309 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 DCDP81605 110 aaKnown RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 SPOCK1Q08629 439 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 LPAL2Q16609 132 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 DMRTC1Q5HYR2 192 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 OR10K2Q6IF99 312 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 DCXRQ7Z4W1 244 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 LILRB4Q8NHJ6 448 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 GHITMQ9H3K2 345 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 PPP4R1LQ9P1A2 415 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 MGAT4AQ9UM21 535 aa9.29□□□□□ -0.92
LIMA1-201ENST00000341247 RPH3AQ9Y2J0 694 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 PRRC2CQ9Y520 2896 aaKnown RBP9.29□□□□□ -0.92
LIMA1-201ENST00000341247 GPR179Q6PRD1 2367 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 TRBV5-5A0A0J9YX44 114 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 MS4A18H0YCH9 400 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ITGA5P08648 1049 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 SSTR2P30874 369 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 HTR2BP41595 481 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 POU3F4P49335 361 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 BTG1P62324 171 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ACY1Q03154 408 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 GLO1Q04760 184 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 EGR3Q06889 387 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 GSG1Q2KHT4 349 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 MS4A18Q3C1V0 323 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 LAMTOR1Q6IAA8 161 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 NUP54Q7Z3B4 507 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ZNF679Q8IYX0 411 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 UXS1Q8NBZ7 420 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 OR51A2Q8NGJ7 313 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ZFAND1Q8TCF1 268 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 PCNPQ8WW12 178 aaKnown RBP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 TMEM234Q8WY98 164 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 DVL3Q92997 716 aaPredicted RBP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 NKD1Q969G9 470 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 SCMH1Q96GD3 660 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 TAS2R4Q9NYW5 299 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 STMN3Q9NZ72 180 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 NCOR1O75376 2440 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 NUP210LQ5VU65 1888 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 TRAV18A0A075B6X5 111 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ANXA7P20073 488 aaKnown RBP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 RIDAP52758 137 aaKnown RBP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 SLC26A5P58743 744 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 NR0B2Q15466 257 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ZNF227Q86WZ6 799 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 PIAS4Q8N2W9 510 aaPredicted RBP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 OR11H4Q8NGC9 324 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 RPS4Y2Q8TD47 263 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 SNAPC3Q92966 411 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 CITED4Q96RK1 184 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 GAREM1Q9H706 876 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 C12orf10Q9HB07 376 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ITGB1BP2Q9UKP3 347 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 DHDHQ9UQ10 334 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 TMEM200CA6NKL6 621 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms