RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ANKRD16Q6P6B7 361 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 ZNF813Q6ZN06 617 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 CXXC5Q7LFL8 322 aaKnown RBP19.44■□□□□ 0.7
SDC3-202ENST00000339394 GLB1L2Q8IW92 636 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 C1orf162Q8NEQ5 155 aaPredicted RBP19.44■□□□□ 0.7
SDC3-202ENST00000339394 PROKR2Q8NFJ6 384 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 BBS1Q8NFJ9 593 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 OR51L1Q8NGJ5 315 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 TRUB1Q8WWH5 349 aaKnown RBP19.44■□□□□ 0.7
SDC3-202ENST00000339394 HTRA1Q92743 480 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 TFAP2CQ92754 450 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 BCL2L2Q92843 193 aaPredicted RBP19.44■□□□□ 0.7
SDC3-202ENST00000339394 OR51V1Q9H2C8 321 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 NELFAQ9H3P2 528 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 SEC61A2Q9H9S3 476 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 H0YAE9 185 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 PYCR1P32322 319 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 CAPGP40121 348 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 HIKESHIQ53FT3 197 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 BCDIN3DQ7Z5W3 292 aaKnown RBP19.44■□□□□ 0.7
SDC3-202ENST00000339394 STEAP2Q8NFT2 490 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 S100PBPQ96BU1 408 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 BOD1Q96IK1 185 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 ACTR6Q9GZN1 396 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 ZNF226Q9NYT6 803 aa19.44■□□□□ 0.7
SDC3-202ENST00000339394 KLF2Q9Y5W3 355 aaPredicted RBP19.44■□□□□ 0.7
SDC3-202ENST00000339394 A0A1W2PPL8 197 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 GPANK1O95872 356 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 LAP3P28838 519 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 GUCA1AP43080 201 aaPredicted RBP19.43■□□□□ 0.7
SDC3-202ENST00000339394 CENPAP49450 140 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 MRPS34P82930 218 aaKnown RBP19.43■□□□□ 0.7
SDC3-202ENST00000339394 GLO1Q04760 184 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 SNTB1Q13884 538 aaKnown RBP19.43■□□□□ 0.7
SDC3-202ENST00000339394 C6orf52Q5T4I8 152 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 KLHL24Q6TFL4 600 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 FOXL2NBQ6ZUU3 175 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 ENTHD1Q8IYW4 607 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 DEPDC4Q8N2C3 294 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 SLC22A24Q8N4F4 322 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 NABP1Q96AH0 204 aa19.43■□□□□ 0.7
SDC3-202ENST00000339394 GCN1Q92616 2671 aaKnown RBP19.43■□□□□ 0.7
SDC3-202ENST00000339394 SPTBN1Q01082 2364 aaKnown RBP19.43■□□□□ 0.7
SDC3-202ENST00000339394 C19orf84I3L1E1 186 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 SCG5P05408 212 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 NPR2P20594 1047 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 SORDQ00796 357 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 TBRG1Q3YBR2 411 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 NRN1LQ496H8 165 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 AADACL4Q5VUY2 407 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 ZNF691Q5VV52 312 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 C22orf34Q6ZV56 151 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 APOL4Q9BPW4 351 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 SIAEQ9HAT2 523 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 RASSF1Q9NS23 344 aa19.42■□□□□ 0.7
SDC3-202ENST00000339394 OR5H1A6NKK0 313 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 MPZL1O95297 269 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 GNAO1P09471 354 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 OR8G3PP0DMU2 310 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 SGCAQ16586 387 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 KLHL12Q53G59 568 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 OR6K6Q8NGW6 343 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 OR10A4Q9H209 315 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 POLE4Q9NR33 117 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 AASSQ9UDR5 926 aa19.41■□□□□ 0.7
SDC3-202ENST00000339394 PRODHO43272 600 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 TFP02787 698 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 GAAP10253 952 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 GABRB1P18505 474 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 FASNP49327 2511 aaKnown RBP19.4■□□□□ 0.7
SDC3-202ENST00000339394 SNRPGP62308 76 aaKnown RBP19.4■□□□□ 0.7
SDC3-202ENST00000339394 HSF2Q03933 536 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 TIMM23BQ5SRD1 257 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 LINC01590Q5TEZ4 76 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 FAM27BQ5VT28 67 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 NXNL2Q5VZ03 156 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 OTPQ5XKR4 325 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 SKA3Q8IX90 412 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 LRRC18Q8N456 261 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 C17orf78Q8N4C9 275 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 RHOXF1Q8NHV9 184 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 SH3GL3Q99963 347 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 USB1Q9BQ65 265 aaKnown RBP19.4■□□□□ 0.7
SDC3-202ENST00000339394 SLC17A5Q9NRA2 495 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 MOKQ9UQ07 419 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 A0A1W2PR80 420 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 FARS2O95363 451 aaKnown RBP19.4■□□□□ 0.7
SDC3-202ENST00000339394 CLDN1O95832 211 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 HLA-DQA2P01906 255 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 SLC2A5P22732 501 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 APOFQ13790 326 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 SLC25A30Q5SVS4 291 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 UGT2A3Q6UWM9 527 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 LYPD4Q6UWN0 246 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 B3GLCTQ6Y288 498 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 USP51Q70EK9 711 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 P2RY8Q86VZ1 359 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 WDR31Q8NA23 367 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 SLC26A10Q8NG04 563 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 C11orf40Q8WZ69 217 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms