RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 H2AFB1P0C5Y9 115 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 OTX2P32243 289 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 RAB38P57729 211 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 IGSF11Q5DX21 431 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 YOD1Q5VVQ6 348 aaPredicted RBP10.57□□□□□ -0.72
VPS39-201ENST00000318006 LYSMD4Q5XG99 296 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 FAM71E1Q6IPT2 247 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 BRICD5Q6PL45 260 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 ZNF595Q8IYB9 648 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 OR2G3Q8NGZ4 309 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 SFT2D1Q8WV19 159 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 MRPL38Q96DV4 380 aaKnown RBP10.57□□□□□ -0.72
VPS39-201ENST00000318006 PAPOLGQ9BWT3 736 aaKnown RBP10.57□□□□□ -0.72
VPS39-201ENST00000318006 CHRDQ9H2X0 955 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 CDCP1Q9H5V8 836 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 UBQLN4Q9NRR5 601 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 VSTM5A8MXK1 200 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 SCAF4O95104 1147 aaKnown RBP10.57□□□□□ -0.72
VPS39-201ENST00000318006 HPNP05981 417 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 NPY4RP50391 375 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 RAB11AP62491 216 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 OR7A5Q15622 319 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 METRNLQ641Q3 311 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 C12orf10Q9HB07 376 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 CEBPZOSA8MTT3 80 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ZNF724A8MTY0 619 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 C17orf112F2Z3M2 114 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 H3BML4 177 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 NME2P1O60361 137 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 BLVRBP30043 206 aaPredicted RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 ATP1B3P54709 279 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 H3F3AP84243 136 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 LTB4RQ15722 352 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 PRSS36Q5K4E3 855 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 SFRP5Q5T4F7 317 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ATPAF1Q5TC12 328 aaPredicted RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 SHISA6Q6ZSJ9 500 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ADIPOR2Q86V24 386 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 PRR18Q8N4B5 295 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 WDFY2Q96P53 400 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ARHGAP9Q9BRR9 750 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 SLC6A17Q9H1V8 727 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 STRAPQ9Y3F4 350 aaKnown RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 COL4A5P29400 1685 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ARRDC5A6NEK1 342 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 K7ESM1 405 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 F10P00742 488 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 TRHRP34981 398 aaPredicted RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 F2RL1P55085 397 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 SELENOVP59797 346 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 SMUG1Q53HV7 270 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 FAM199XQ6PEV8 388 aaPredicted RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 SLC16A12Q6ZSM3 486 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 FAM58AQ8N1B3 248 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 GABRG1Q8N1C3 465 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 C19orf47Q8N9M1 422 aaKnown RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 OR8D4Q8NGM9 314 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 AMDHD1Q96NU7 426 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 PARP12Q9H0J9 701 aaKnown RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 GLIPR2Q9H4G4 154 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 IKZF5Q9H5V7 419 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 IL21Q9HBE4 155 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 TNFRSF12AQ9NP84 129 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 H3BNC9 293 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 H7BYZ3 331 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 BCL2L11O43521 198 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 IGFBP1P08833 259 aaPredicted RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 DBHP09172 617 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 BCKDHBP21953 392 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 EPHA2P29317 976 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 PSMB3P49720 205 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 MEOX2P50222 304 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 UBE2MP61081 183 aaKnown RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 ERV3-1Q14264 604 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ABHD17CQ6PCB6 329 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 RBM45Q8IUH3 476 aaKnown RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 TMEFF1Q8IYR6 380 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 LGI3Q8N145 548 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 TMEM99Q8N816 258 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 AKR7LQ8NHP1 331 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ATF6BQ99941 703 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 DUSP23Q9BVJ7 150 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 VDAC3Q9Y277 283 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ZFP92A6NM28 416 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 M0R082 166 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 YKT6O15498 198 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 APOA2P02652 100 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 CHRM2P08172 466 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 NQO2P16083 231 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 POU3F3P20264 500 aaPredicted RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 KITLGP21583 273 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 ACHEP22303 614 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 HSF5Q4G112 596 aaPredicted RBP10.56□□□□□ -0.72
VPS39-201ENST00000318006 Q6ZNB5 142 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 WDR5BQ86VZ2 330 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 PLPP7Q8NBV4 271 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 OR13C8Q8NGS7 320 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 NUP205Q92621 2012 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 PDXPQ96GD0 296 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms