RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CCDC22O60826 627 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 CLPTM1O96005 669 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 TSPAN19P0C672 248 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 NR2C1P13056 603 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 FUT4P22083 530 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 CCNOP22674 350 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 APLNRP35414 380 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 MDH1P40925 334 aaKnown RBP16.74■□□□□ 0.27
LIME1-201ENST00000309546 SELENOVP59797 346 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 MRPS34P82930 218 aaKnown RBP16.74■□□□□ 0.27
LIME1-201ENST00000309546 TRAM2Q15035 370 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 SGCAQ16586 387 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 PABPC1L2AQ5JQF8 200 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 ELFN2Q5R3F8 820 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 OFCC1Q8IZS5 231 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 GEMIN6Q8WXD5 167 aaKnown RBP16.74■□□□□ 0.27
LIME1-201ENST00000309546 TMEM158Q8WZ71 300 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 TSPAN32Q96QS1 320 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 NARFLQ9H6Q4 476 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 SIAEQ9HAT2 523 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 TAAR3PQ9P1P4 343 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 UGT2A1Q9Y4X1 527 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 TRAV27A0A087WT01 109 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 NME4O00746 187 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 SNAP29O95721 258 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 MMP7P09237 267 aaPredicted RBP16.73■□□□□ 0.27
LIME1-201ENST00000309546 ZNF32P17041 273 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 MAKP20794 623 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 GPR6P46095 362 aaPredicted RBP16.73■□□□□ 0.27
LIME1-201ENST00000309546 ZNF133P52736 654 aaPredicted RBP16.73■□□□□ 0.27
LIME1-201ENST00000309546 KLF3P57682 345 aaPredicted RBP16.73■□□□□ 0.27
LIME1-201ENST00000309546 CTXN1P60606 82 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 RPL27P61353 136 aaKnown RBP16.73■□□□□ 0.27
LIME1-201ENST00000309546 GLO1Q04760 184 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 CR1LQ2VPA4 569 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 IFI44LQ53G44 452 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 FKBP9P1Q75LS8 142 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 PHC2Q8IXK0 858 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 CLDN22Q8N7P3 220 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 OR51A7Q8NH64 312 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 SYNPRQ8TBG9 265 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 SNX33Q8WV41 574 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 RDH5Q92781 318 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 HPS1Q92902 700 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 FAM162AQ96A26 154 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 HSH2DQ96JZ2 352 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 REPIN1Q9BWE0 567 aaKnown RBP16.73■□□□□ 0.27
LIME1-201ENST00000309546 SMURF2Q9HAU4 748 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 MED4Q9NPJ6 270 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 MAN2C1Q9NTJ4 1040 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 COL6A5A8TX70 2615 aa16.73■□□□□ 0.27
LIME1-201ENST00000309546 GMNCA6NCL1 334 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 EFCAB9A8MZ26 197 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 NCR1O76036 304 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 SERPINA1P01009 418 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 IGHMP01871 453 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 COL8A2P25067 703 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 RAD52P43351 418 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 NUDT2P50583 147 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 ERVK-25P63136 954 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 TAF11Q15544 211 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 ZNF730Q6ZMV8 503 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 LINC01356Q8N9X3 169 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 OR13C2Q8NGS9 318 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 ZNF519Q8TB69 540 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 C11orf40Q8WZ69 217 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 NABP1Q96AH0 204 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 NMD3Q96D46 503 aaKnown RBP16.72■□□□□ 0.27
LIME1-201ENST00000309546 RBP7Q96R05 134 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 ALG12Q9BV10 488 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 BCL2L14Q9BZR8 327 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 GPR160Q9UJ42 338 aa16.72■□□□□ 0.27
LIME1-201ENST00000309546 A0A1W2PPL8 197 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 HTR3EA5X5Y0 456 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 FFAR1O14842 300 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 NCK1P16333 377 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 ACHEP22303 614 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 STOMP27105 288 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 MAGEB1P43366 347 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 GSK3BP49841 420 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 UCP2P55851 309 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 PRKCDQ05655 676 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 TMEM154Q6P9G4 183 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 SLC25A47Q6Q0C1 308 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 CBLL1Q75N03 491 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 OAFQ86UD1 273 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 TREML1Q86YW5 311 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 CPEB3Q8NE35 698 aaKnown RBP16.71■□□□□ 0.27
LIME1-201ENST00000309546 OR1J1Q8NGS3 322 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 AKR7LQ8NHP1 331 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 ACOT11Q8WXI4 607 aaPredicted RBP16.71■□□□□ 0.27
LIME1-201ENST00000309546 YIPF5Q969M3 257 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 HOPXQ9BPY8 73 aaPredicted RBP16.71■□□□□ 0.27
LIME1-201ENST00000309546 EFCAB1Q9HAE3 211 aa16.71■□□□□ 0.27
LIME1-201ENST00000309546 HINT3Q9NQE9 182 aaKnown RBP16.71■□□□□ 0.27
LIME1-201ENST00000309546 ZNF275Q9NSD4 429 aaPredicted RBP16.71■□□□□ 0.27
LIME1-201ENST00000309546 C17orf100A8MU93 164 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 H7C1C5 153 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 PPIHO43447 177 aaKnown RBP16.7■□□□□ 0.26
LIME1-201ENST00000309546 MGRN1O60291 552 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms