RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FAM24BQ8N5W8 94 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 ZNF676Q8N7Q3 588 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 OR2L2Q8NH16 312 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 CCDC107Q8WV48 283 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 DTD2Q96FN9 168 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 MENTQ9BUN1 341 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 KNL1Q8NG31 2342 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 KIAA1549LQ6ZVL6 1849 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 H0YIZ8 118 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 GPRIN2O60269 458 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 HEXAP06865 529 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 MNX1P50219 401 aaPredicted RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 ALKBH1Q13686 389 aaKnown RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 FOXRED2Q8IWF2 684 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 SLC35F3Q8IY50 421 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 ZSCAN4Q8NAM6 433 aaPredicted RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 NPEPL1Q8NDH3 523 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 OR4K17Q8NGC6 315 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 RNF141Q8WVD5 230 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 CCDC74AQ96AQ1 378 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 MARS2Q96GW9 593 aaKnown RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 MEGF10Q96KG7 1140 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 PELI2Q9HAT8 420 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 CYTL1Q9NRR1 136 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 CGGBP1Q9UFW8 167 aaPredicted RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 HEATR5AQ86XA9 2040 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3DA0A087WVF3 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3IA0A087WXS9 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3KA0A087X1G2 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 A0A1W2PPC1 479 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3BA6NDS4 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3FA6NER0 549 aaPredicted RBP12.21□□□□□ -0.45
SKA3-201ENST00000298260 ELOA3DA6NLF2 546 aaPredicted RBP12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3LB9A6J9 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 OIP5O43482 229 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3HP0C7X1 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 SLC25A4P12235 298 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 ACKR3P25106 362 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 CCKBRP32239 447 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 MNDAP41218 407 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 ELOA3BQ3SY89 546 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 VWA2Q5GFL6 755 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 CYB5R2Q6BCY4 276 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3GQ6DHY5 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3CQ6IPX1 549 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 ARHGAP11AQ6P4F7 1023 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 RNF44Q7L0R7 432 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 SKA3Q8IX90 412 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 TBC1D3Q8IZP1 549 aaPredicted RBP12.21□□□□□ -0.45
SKA3-201ENST00000298260 ELOA3Q8NG57 546 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 AKR7LQ8NHP1 331 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 FAM3DQ96BQ1 224 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 CMBLQ96DG6 245 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 ADAD1Q96M93 576 aaKnown RBP12.21□□□□□ -0.45
SKA3-201ENST00000298260 SLC2A4RGQ9NR83 387 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 MMP26Q9NRE1 261 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 SMCO4Q9NRQ5 59 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 IL36AQ9UHA7 158 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 KCNG2Q9UJ96 466 aa12.21□□□□□ -0.45
SKA3-201ENST00000298260 MED19A0JLT2 244 aaPredicted RBP12.21□□□□□ -0.46
SKA3-201ENST00000298260 CXorf65A6NEN9 183 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 OR52A4PA6NMU1 304 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 FBXO24O75426 580 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 UPK3AO75631 287 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 ABLIM3O94929 683 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 RHOP08100 348 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 EMDP50402 254 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 IL13RA1P78552 427 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 GAS6Q14393 721 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 PRAMEF8Q5VWM4 474 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 PRAMEF7Q5VXH5 474 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 ZNF585AQ6P3V2 769 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 SLC39A5Q6ZMH5 540 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 POMGNT2Q8NAT1 580 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 OR2A1Q8NGT9 310 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 SLC2A12Q8TD20 617 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 MRGPRFQ96AM1 343 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 TAS2R8Q9NYW2 309 aa12.21□□□□□ -0.46
SKA3-201ENST00000298260 GRXCR1A8MXD5 290 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 PRAMEF26H0Y7S4 382 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 LRP3O75074 770 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 LDB3O75112 727 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 CD63P08962 238 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 ZNF735P0CB33 412 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 TPT1P13693 172 aaKnown RBP12.2□□□□□ -0.46
SKA3-201ENST00000298260 CXADRP78310 365 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 ELAVL2Q12926 359 aaKnown RBP12.2□□□□□ -0.46
SKA3-201ENST00000298260 ALG10BQ5I7T1 473 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 PYY3Q5JQD4 70 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 TTLL10Q6ZVT0 673 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 AMZ2Q86W34 360 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 PARGQ86W56 976 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 ZCCHC10Q8TBK6 192 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 GPX8Q8TED1 209 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 SLC25A43Q8WUT9 341 aaPredicted RBP12.2□□□□□ -0.46
SKA3-201ENST00000298260 FOXRED1Q96CU9 486 aaPredicted RBP12.2□□□□□ -0.46
SKA3-201ENST00000298260 NUS1Q96E22 293 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 TRMT2BQ96GJ1 504 aaKnown RBP12.2□□□□□ -0.46
SKA3-201ENST00000298260 AMELYQ99218 206 aa12.2□□□□□ -0.46
SKA3-201ENST00000298260 ALG12Q9BV10 488 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms