RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 A0A1W2PPW3 197 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 CENPBD1B2RD01 187 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 B4DSR2 109 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 FXYD1O00168 92 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 MGRN1O60291 552 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 NCR1O76036 304 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 OR5F1O95221 314 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 SNAP29O95721 258 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 PTHP01270 115 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 IGF2P01344 180 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 IFNA14P01570 189 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 VIMP08670 466 aaKnown RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 MMP7P09237 267 aaPredicted RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 TSPAN19P0C672 248 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ACHEP22303 614 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 RAD52P43351 418 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 MAGEB1P43366 347 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 GPR6P46095 362 aaPredicted RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 OR1E2P47887 323 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ZNF84P51523 738 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ZNF133P52736 654 aaPredicted RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 UCP2P55851 309 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 TAS2R41P59536 307 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 SELENOVP59797 346 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ERVS71-1P61550 626 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 PLP2Q04941 152 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 KLF10Q13118 480 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 TBC1D28Q2M2D7 210 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ALKBH6Q3KRA9 238 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 MMEL1Q495T6 779 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ARMC4Q5T2S8 1044 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 LIPNQ5VXI9 398 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 DEF8Q6ZN54 512 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 SLC16A14Q7RTX9 510 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 LRRC18Q8N456 261 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 RBM15BQ8NDT2 890 aaKnown RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 CPEB3Q8NE35 698 aaKnown RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 OR8J3Q8NGG0 315 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 OR1J2Q8NGS2 313 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 MOSPD2Q8NHP6 518 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 CLDND2Q8NHS1 167 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ZNF519Q8TB69 540 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 SYNPRQ8TBG9 265 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 TMEM239Q8WW34 195 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 C11orf40Q8WZ69 217 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 SGTBQ96EQ0 304 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 TSPAN32Q96QS1 320 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 TMEM120AQ9BXJ8 343 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 POLR2J2Q9GZM3 115 aaKnown RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 POLR2J3Q9H1A7 115 aaKnown RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 LRMDAQ9H2I8 198 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 OR51B6Q9H340 312 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 CDH20Q9HBT6 801 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 INIPQ9NRY2 104 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ZNF275Q9NSD4 429 aaPredicted RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 GPR160Q9UJ42 338 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 BAG5Q9UL15 447 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 ZNF346Q9UL40 294 aaKnown RBP6.52□□□□□ -1.37
CUX1-219ENST00000606749 IGKV1D-43A0A0B4J1Z2 117 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 LOC100653049A0A140TA62 436 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 IQCMA0A1B0GVH7 501 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 C17orf100A8MU93 164 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 FAM157AC9JC47 383 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 MCIDASD6RGH6 385 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 MRASO14807 208 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 PPIHO43447 177 aaKnown RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 RP2O75695 350 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 KRT34O76011 436 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 LCKP06239 509 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 GAAP10253 952 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 SAGP10523 405 aaPredicted RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 THRBP10828 461 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 H2AFXP16104 143 aaPredicted RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 CDAP32320 146 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 KDELR2P33947 212 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 SRP14P37108 136 aaKnown RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 DAP3P51398 398 aaKnown RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 KLF3P57682 345 aaPredicted RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 LMO4P61968 165 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 SELENOWP63302 87 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 CCL8P80075 99 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 MRPS34P82930 218 aaKnown RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 NKPD1Q17RQ9 610 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 COQ5Q5HYK3 327 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 PABPC1L2AQ5JQF8 200 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 C10orf128Q5T292 105 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 ERICH5Q6P6B1 374 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 HDDC2Q7Z4H3 204 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 RFLNBQ8N5W9 214 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 NOXO1Q8NFA2 376 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 HDAC2Q92769 488 aaKnown RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 NMD3Q96D46 503 aaKnown RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 ZNF416Q9BWM5 594 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 BCL2L14Q9BZR8 327 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 KCNN2Q9H2S1 579 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 TXNIPQ9H3M7 391 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 C1orf198Q9H425 327 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 NARFLQ9H6Q4 476 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 SIAEQ9HAT2 523 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 HINT3Q9NQE9 182 aaKnown RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms