RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 A0A096LPE4 126 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 ARPC4-TTLL3A0A0A6YYG9 625 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 A0A1W2PPZ6 126 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 SEC14L2O76054 403 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 GOSR1O95249 250 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 HOXC12P31275 282 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 ZNF84P51523 738 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 NRN1LQ496H8 165 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 KDM4DQ6B0I6 523 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 KLHL24Q6TFL4 600 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 SEZ6L2Q6UXD5 910 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 ZNF813Q6ZN06 617 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 CCDC36Q8IYA8 594 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 OR4K13Q8NH42 304 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 NSMAFQ92636 917 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 SYT4Q9H2B2 425 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 UGT2A1Q9Y4X1 527 aa16.93■□□□□ 0.3
UPF1-209ENST00000600310 A0A1W2PR80 420 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 FAM221AA4D161 298 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 A6NNC1 897 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 DEFB108AA8MXU0 73 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 BAG2O95816 211 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 B4GALT1P15291 398 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 UBE2NP61088 152 aaKnown RBP16.92■□□□□ 0.3
UPF1-209ENST00000600310 PPP2R2BQ00005 443 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 PGGHGQ32M88 737 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 ZNF362Q5T0B9 420 aaPredicted RBP16.92■□□□□ 0.3
UPF1-209ENST00000600310 SLC35F1Q5T1Q4 408 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 JAZF1Q86VZ6 243 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 OR52E2Q8NGJ4 325 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 NMNAT3Q96T66 252 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 NGBQ9NPG2 151 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 KRT84Q9NSB2 600 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 PKDREJQ9NTG1 2253 aa16.92■□□□□ 0.3
UPF1-209ENST00000600310 MGRN1O60291 552 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 WNT11O96014 354 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 RENP00797 406 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 OR8G3PP0DMU2 310 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 PAX7P23759 505 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 POU1F1P28069 291 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 GIPRP48546 466 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 MRPS34P82930 218 aaKnown RBP16.91■□□□□ 0.3
UPF1-209ENST00000600310 CDK5Q00535 292 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.91■□□□□ 0.3
UPF1-209ENST00000600310 BEX5Q5H9J7 111 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 ALKBH2Q6NS38 261 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 SLC27A4Q6P1M0 643 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 LEG1Q6P5S2 330 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 FOXL2NBQ6ZUU3 175 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 SLC22A24Q8N4F4 322 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 NPEPL1Q8NDH3 523 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 DDOQ99489 341 aa16.91■□□□□ 0.3
UPF1-209ENST00000600310 RBM4BQ9BQ04 359 aaKnown RBP16.91■□□□□ 0.3
UPF1-209ENST00000600310 RBM4Q9BWF3 364 aaKnown RBP16.91■□□□□ 0.3
UPF1-209ENST00000600310 TMEFF2Q9UIK5 374 aaPredicted RBP16.91■□□□□ 0.3
UPF1-209ENST00000600310 SIAH2O43255 324 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 SLC16A7O60669 478 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 MITFO75030 526 aaPredicted RBP16.9■□□□□ 0.3
UPF1-209ENST00000600310 KHDRBS3O75525 346 aaKnown RBP16.9■□□□□ 0.3
UPF1-209ENST00000600310 CTLA4P16410 223 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 NPR2P20594 1047 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 SSTR2P30874 369 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 GRK5P34947 590 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 CRISP1P54107 249 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 ESRRGP62508 458 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 ELF3P78545 371 aaPredicted RBP16.9■□□□□ 0.3
UPF1-209ENST00000600310 GINS1Q14691 196 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 ETFDHQ16134 617 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 IQCF1Q8N6M8 205 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 SDR9C7Q8NEX9 313 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 CIB1Q99828 191 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 NUAK2Q9H093 628 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 SLC25A19Q9HC21 320 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 NPAP1Q9NZP6 1156 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 ENOPH1Q9UHY7 261 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 KLHL21Q9UJP4 597 aa16.9■□□□□ 0.3
UPF1-209ENST00000600310 NOTCH2Q04721 2471 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 ANKHD1Q8IWZ3 2542 aaKnown RBP16.89■□□□□ 0.29
UPF1-209ENST00000600310 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.89■□□□□ 0.29
UPF1-209ENST00000600310 OR6C68A6NDL8 312 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 CTAG2O75638 210 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 FARS2O95363 451 aaKnown RBP16.89■□□□□ 0.29
UPF1-209ENST00000600310 HRGP04196 525 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 IGFBP5P24593 272 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 LOXP28300 417 aaPredicted RBP16.89■□□□□ 0.29
UPF1-209ENST00000600310 CRABP1P29762 137 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 CDAP32320 146 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 TUBA1BP68363 451 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 TUBA4AP68366 448 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 TLE4Q04727 773 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 DAG1Q14118 895 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 RCN1Q15293 331 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 ACSM5Q6NUN0 579 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 DNM1P34Q6PK57 102 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 TUBA1AQ71U36 451 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 SKA3Q8IX90 412 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 FAM169BQ8N8A8 192 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 SLC37A3Q8NCC5 494 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 NABP1Q96AH0 204 aa16.89■□□□□ 0.29
UPF1-209ENST00000600310 C9orf16Q9BUW7 83 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms