RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TP63Q9H3D4 680 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-209ENST00000597423 PAK1IP1Q9NWT1 392 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-209ENST00000597423 ING1Q9UK53 422 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-209ENST00000597423 COA3Q9Y2R0 106 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-209ENST00000597423 TRIM64CA6NLI5 447 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 PHYHO14832 338 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 SS18L1O75177 396 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-209ENST00000597423 MT-ND2P03891 347 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 HRGP04196 525 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 CRHP06850 196 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 CTLA4P16410 223 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 LAP3P28838 519 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 C21orf33P30042 268 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-209ENST00000597423 RPL5P46777 297 aaKnown RBP13.51□□□□□ -0.25
TRIM28-209ENST00000597423 CAPZA2P47755 286 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF133P52736 654 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-209ENST00000597423 PER3P56645 1201 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 PIGFQ07326 219 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 STK11Q15831 433 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 C10orf128Q5T292 105 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 LINC01590Q5TEZ4 76 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 LRFN4Q6PJG9 635 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 KCTD8Q6ZWB6 473 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 SHFQ7M4L6 423 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 FGD2Q7Z6J4 655 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 EGFL6Q8IUX8 553 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 OR10H4Q8NGA5 316 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 OR4F15Q8NGB8 312 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 CPT1CQ8TCG5 803 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 KISS1RQ969F8 398 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-209ENST00000597423 ZFP3Q96NJ6 502 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 RBM24Q9BX46 236 aaKnown RBP13.51□□□□□ -0.25
TRIM28-209ENST00000597423 SLCO5A1Q9H2Y9 848 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 SEC61A2Q9H9S3 476 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 ADGRL4Q9HBW9 690 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 BATF3Q9NR55 127 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 UPB1Q9UBR1 384 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 KCNG2Q9UJ96 466 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 CELSR3Q9NYQ7 3312 aa13.51□□□□□ -0.25
TRIM28-209ENST00000597423 CHD8Q9HCK8 2581 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 ZFHX4Q86UP3 3567 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 EIF4E1BA6NMX2 242 aaKnown RBP13.5□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF670-ZNF695F2Z2N8 137 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 DCTN6O00399 190 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 MYL12BO14950 172 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 DHHO43323 396 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 IL2RAP01589 272 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 SMIM18P0DKX4 95 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 NPR2P20594 1047 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 EMX1Q04741 257 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-209ENST00000597423 BLMHQ13867 455 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 LY6DQ14210 128 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 ST3GAL2Q16842 350 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 RPTNQ6XPR3 784 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 B3GLCTQ6Y288 498 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 B3GNT6Q6ZMB0 384 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 FAM214BQ7L5A3 538 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 CD163Q86VB7 1156 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 ERI1Q8IV48 349 aaKnown RBP13.5□□□□□ -0.25
TRIM28-209ENST00000597423 SLC35F2Q8IXU6 374 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF454Q8N9F8 522 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF511Q8NB15 262 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 RORBQ92753 470 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 NMD3Q96D46 503 aaKnown RBP13.5□□□□□ -0.25
TRIM28-209ENST00000597423 MND1Q9BWT6 205 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 MARCH7Q9H992 704 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 FOXD3Q9UJU5 478 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-209ENST00000597423 CLEC4AQ9UMR7 237 aa13.5□□□□□ -0.25
TRIM28-209ENST00000597423 MED12Q93074 2177 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 A0A1W2PPL8 197 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 MBD3L4A6NDZ8 208 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 MBD3L3A6NE82 208 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 MBD3L5A6NJ08 208 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 J3QRE1 110 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF593O00488 134 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 IGHA1P01876 353 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 MRPL3P09001 348 aaKnown RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 JUNBP17275 347 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 AGTR1P30556 359 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 TIMP3P35625 211 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 ENTPD1P49961 510 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 ADAM8P78325 824 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 FMODQ06828 376 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 TBCEQ15813 527 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 ETFDHQ16134 617 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 TEX30Q5JUR7 227 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 KCTD20Q7Z5Y7 419 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 TIGD4Q8IY51 512 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 UBE2J2Q8N2K1 259 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 KLHL36Q8N4N3 616 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 MBD3L2Q8NHZ7 208 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-209ENST00000597423 ASB17Q8WXJ9 295 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 SGCDQ92629 289 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 SIGLEC11Q96RL6 698 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 RHNO1Q9BSD3 238 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 WDR76Q9H967 626 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 ACOT13Q9NPJ3 140 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 LAMP5Q9UJQ1 280 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF835Q9Y2P0 537 aa13.49□□□□□ -0.25
TRIM28-209ENST00000597423 TMEM129A0AVI4 362 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms