RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CLDN22Q8N7P3 220 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 GEMIN6Q8WXD5 167 aaKnown RBP11.23□□□□□ -0.61
LIG1-212ENST00000596549 BPIFA2Q96DR5 249 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 FOXN4Q96NZ1 517 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 KCNK17Q96T54 332 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 ELAC2Q9BQ52 826 aaKnown RBP11.23□□□□□ -0.61
LIG1-212ENST00000596549 SYT3Q9BQG1 590 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 SOX7Q9BT81 388 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 DYNLRB1Q9NP97 96 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 MYOZ1Q9NP98 299 aaPredicted RBP11.23□□□□□ -0.61
LIG1-212ENST00000596549 AP3M1Q9Y2T2 418 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 CMAHPQ9Y471 501 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 TRAV27A0A087WT01 109 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 A0A087WUU8 490 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 LOC390937A0A1W2PQ73 354 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 CDAP32320 146 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 ERVS71-1P61550 626 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 MAD2L1BPQ15013 274 aaPredicted RBP11.22□□□□□ -0.61
LIG1-212ENST00000596549 CARTPTQ16568 116 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 IFI44LQ53G44 452 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 RTTNQ86VV8 2226 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 SLC30A7Q8NEW0 376 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 OR13C2Q8NGS9 318 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 ZNF519Q8TB69 540 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 LZICQ8WZA0 190 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 TSPAN32Q96QS1 320 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 MDFIQ99750 246 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 HOPXQ9BPY8 73 aaPredicted RBP11.22□□□□□ -0.61
LIG1-212ENST00000596549 RAB1BQ9H0U4 201 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 TXNIPQ9H3M7 391 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 EFCAB1Q9HAE3 211 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 SLC7A8Q9UHI5 535 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 FBXL3Q9UKT7 428 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 FZR1Q9UM11 496 aa11.22□□□□□ -0.61
LIG1-212ENST00000596549 M0R233 179 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 CDC42EP2O14613 210 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 MGRN1O60291 552 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 FARS2O95363 451 aaKnown RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 STAMBPO95630 424 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 ADRA2AP08913 450 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 FAM157BP0CG42 384 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 SAGP10523 405 aaPredicted RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 DAOP14920 347 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 ZNF26P17031 533 aaPredicted RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 ALDH3B1P43353 468 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 GPR4P46093 362 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 EVX1P49640 407 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 ZNF84P51523 738 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 PRKCDQ05655 676 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 CD47Q08722 323 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 TRAM2Q15035 370 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 SLC25A47Q6Q0C1 308 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 SLC16A14Q7RTX9 510 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 HDDC2Q7Z4H3 204 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 LRRC18Q8N456 261 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 FAM86B1Q8N7N1 296 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 NEU4Q8WWR8 484 aaPredicted RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 ACOT11Q8WXI4 607 aaPredicted RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 KCTD14Q9BQ13 255 aaPredicted RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 SMURF2Q9HAU4 748 aa11.21□□□□□ -0.61
LIG1-212ENST00000596549 FBXO9Q9UK97 447 aaPredicted RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 ZNF346Q9UL40 294 aaKnown RBP11.21□□□□□ -0.61
LIG1-212ENST00000596549 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.21□□□□□ -0.621e-6■■■■□ 25.3
LIG1-212ENST00000596549 LRP5LA4QPB2 252 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 LYNX1G3V0Z9 82 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 GSTA4O15217 222 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 ATP8B1O43520 1251 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 SYNGR3O43761 229 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 SNX3O60493 162 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 NCR1O76036 304 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 SNAP29O95721 258 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 LYNX1P0DP58 116 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 DRD4P21917 467 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 IGFBP5P24593 272 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 GIFP27352 417 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 IL2RGP31785 369 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 PSME3P61289 254 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 RPL27P61353 136 aaKnown RBP11.2□□□□□ -0.62
LIG1-212ENST00000596549 RPS23P62266 143 aaKnown RBP11.2□□□□□ -0.62
LIG1-212ENST00000596549 MRPS34P82930 218 aaKnown RBP11.2□□□□□ -0.62
LIG1-212ENST00000596549 GALK2Q01415 458 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 TRIP10Q15642 601 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 SLC36A2Q495M3 483 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 TMEM255AQ5JRV8 349 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 ELFN2Q5R3F8 820 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 GKAP1Q5VSY0 366 aaPredicted RBP11.2□□□□□ -0.62
LIG1-212ENST00000596549 TMEM53Q6P2H8 277 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 TBPL2Q6SJ96 375 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 FOXL2NBQ6ZUU3 175 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 ARIH2OSQ8N7S6 290 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 CPEB3Q8NE35 698 aaKnown RBP11.2□□□□□ -0.62
LIG1-212ENST00000596549 OR51A7Q8NH64 312 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 NSMAFQ92636 917 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 FAM162AQ96A26 154 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 MSI2Q96DH6 328 aaKnown RBP11.2□□□□□ -0.62
LIG1-212ENST00000596549 FNDC11Q9BVV2 318 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 FAM107BQ9H098 131 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 OR51B6Q9H340 312 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 RNF121Q9H920 327 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 STX18Q9P2W9 335 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms