RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TEAD2	Q15562	447 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	MLF2	Q15773	248 aa	Predicted RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PSMD5	Q16401	504 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	MRPL23	Q16540	153 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SLC25A52	Q3SY17	297 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	CYBRD1	Q53TN4	286 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	DMRTC1	Q5HYR2	192 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PAGE2B	Q5JRK9	111 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	FFAR4	Q5NUL3	377 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	WSCD1	Q658N2	575 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	EDC4	Q6P2E9	1401 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PRMT9	Q6P2P2	845 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	TMEM220	Q6QAJ8	160 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	LINC00523	Q86TU6	105 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SERPINA9	Q86WD7	417 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	TGIF2LX	Q8IUE1	241 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	TBC1D19	Q8N5T2	526 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	TMEM35B	Q8NCS4	154 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	OR52H1	Q8NGJ2	320 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	TCP10L	Q8TDR4	215 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SETD7	Q8WTS6	366 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PDCD6IP	Q8WUM4	868 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	CCDC124	Q96CT7	223 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	DOCK7	Q96N67	2140 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	RILP	Q96NA2	401 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	FOPNL	Q96NB1	174 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	RCHY1	Q96PM5	261 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SORT1	Q99523	831 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	APOL4	Q9BPW4	351 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	CABLES2	Q9BTV7	478 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	CAB39L	Q9H9S4	337 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF160	Q9HCG1	818 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	COA4	Q9NYJ1	87 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	NYAP2	Q9P242	653 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SEC14L4	Q9UDX3	406 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PITPNC1	Q9UKF7	332 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	FBXO5	Q9UKT4	447 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ABCG2	Q9UNQ0	655 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	COPS3	Q9UNS2	423 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PPIAL4A	Q9Y536	164 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ASB4	Q9Y574	426 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	BRWD3	Q6RI45	1802 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	USP6	P35125	1406 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595		A0A0G2JLW4	131 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	FAM92A	A1XBS5	289 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	RAB19	A4D1S5	217 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	IGLON5	A6NGN9	336 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	TUBAL3	A6NHL2	446 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ACOD1	A6NK06	481 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	LINC00587	B1AMM8	73 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	LOC110117498-PIK3R3	F6TDL0	507 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595		M0R3G1	203 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PDHX	O00330	501 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	FCN1	O00602	326 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	DLGAP1	O14490	977 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	MSH4	O15457	936 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	RGS5	O15539	181 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF749	O43361	778 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	SLITRK3	O94933	977 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	CDK1	P06493	297 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	FABP1	P07148	127 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	IGFBP1	P08833	259 aa	Predicted RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	COX4I1	P13073	169 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	FOSL2	P15408	326 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	SPN	P16150	400 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	NELFE	P18615	380 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ME2	P23368	584 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	DUSP3	P51452	185 aa	Predicted RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	EFNB2	P52799	333 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PSMD4	P55036	377 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	AQP5	P55064	265 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	CLDN8	P56748	225 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	GABARAPL2	P60520	117 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	MRPS22	P82650	360 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF45	Q02386	682 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ARL16	Q0P5N6	197 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	CDH17	Q12864	832 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PDIA2	Q13087	525 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	VGLL4	Q14135	290 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	KCNJ11	Q14654	390 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	CHRNA6	Q15825	494 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	NEDD8	Q15843	81 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	SGCA	Q16586	387 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	AANAT	Q16613	207 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	NRF1	Q16656	503 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PPP1R3A	Q16821	1122 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ECSCR	Q19T08	205 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PARP15	Q460N3	678 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	HIKESHI	Q53FT3	197 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	TEX30	Q5JUR7	227 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	RBM48	Q5RL73	367 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	APOOL	Q6UXV4	268 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	STAC2	Q6ZMT1	411 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	GCNT7	Q6ZNI0	430 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	SLC26A9	Q7LBE3	791 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ARC	Q7LC44	396 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	CATSPERD	Q86XM0	798 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	RAB43	Q86YS6	212 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	TCTE3	Q8IZS6	198 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	COMMD1	Q8N668	190 aa		4.07	□□□□□ -1.76

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