RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CCL2P13500 99 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 SEC24CP53992 1094 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 SELENOWP63302 87 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 MAD2L1BPQ15013 274 aaPredicted RBP17.59■□□□□ 0.41
SHMT1-209ENST00000582653 KRTAP24-1Q3LI83 254 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 IL17RELQ6ZVW7 336 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 PAQR4Q8N4S7 273 aaPredicted RBP17.59■□□□□ 0.41
SHMT1-209ENST00000582653 ASB10Q8WXI3 467 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 REV1Q9UBZ9 1251 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 A4GNTQ9UNA3 340 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 MED31Q9Y3C7 131 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 FARS2O95363 451 aaKnown RBP17.58■□□□□ 0.4
SHMT1-209ENST00000582653 FAM157BP0CG42 384 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 ACADSP16219 412 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 ALDH3B1P43353 468 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 YAP1P46937 504 aaKnown RBP17.58■□□□□ 0.4
SHMT1-209ENST00000582653 CR1LQ2VPA4 569 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 UGT2A3Q6UWM9 527 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 LRRC18Q8N456 261 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 LINC01356Q8N9X3 169 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 NOXO1Q8NFA2 376 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 LIPHQ8WWY8 451 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 C1orf159Q96HA4 380 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 SEPHS2Q99611 448 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 OR51B6Q9H340 312 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 CCDC134Q9H6E4 229 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 RHCGQ9UBD6 479 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 DUSP13Q9UII6 198 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 SNX13Q9Y5W8 968 aa17.58■□□□□ 0.4
SHMT1-209ENST00000582653 M0R233 179 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 SLC2A10O95528 541 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 IGF2P01344 180 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 TSPAN19P0C672 248 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 THRBP10828 461 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 IL2RGP31785 369 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 DAP3P51398 398 aaKnown RBP17.57■□□□□ 0.4
SHMT1-209ENST00000582653 ARMC4Q5T2S8 1044 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 SLC16A14Q7RTX9 510 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 VTCN1Q7Z7D3 282 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 MEX3DQ86XN8 651 aaKnown RBP17.57■□□□□ 0.4
SHMT1-209ENST00000582653 SLC15A3Q8IY34 581 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 SLC30A7Q8NEW0 376 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 HDAC2Q92769 488 aaKnown RBP17.57■□□□□ 0.4
SHMT1-209ENST00000582653 SLC7A8Q9UHI5 535 aa17.57■□□□□ 0.4
SHMT1-209ENST00000582653 J3KTA2 159 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 ENTPD5O75356 428 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 APEX1P27695 318 aaKnown RBP17.56■□□□□ 0.4
SHMT1-209ENST00000582653 CDAP32320 146 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 LSP1P33241 339 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 ZNF84P51523 738 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 RPS23P62266 143 aaKnown RBP17.56■□□□□ 0.4
SHMT1-209ENST00000582653 ST3GAL3Q11203 375 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 TRIP10Q15642 601 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 ALKBH6Q3KRA9 238 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 SLC36A2Q495M3 483 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 TMEM53Q6P2H8 277 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 RP9Q8TA86 221 aaKnown RBP17.56■□□□□ 0.4
SHMT1-209ENST00000582653 PRRC1Q96M27 445 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 SNX18Q96RF0 628 aa17.56■□□□□ 0.4
SHMT1-209ENST00000582653 TMEFF2Q9UIK5 374 aaPredicted RBP17.56■□□□□ 0.4
SHMT1-209ENST00000582653 IGKV1D-43A0A0B4J1Z2 117 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 SLC22A2O15244 555 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 CLPTM1O96005 669 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 HPXP02790 462 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 NAT2P11245 290 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 COX4I1P13073 169 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 IFI30P13284 250 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 COL8A2P25067 703 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 ERVS71-1P61550 626 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 LIPEQ05469 1076 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 FMODQ06828 376 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 ELFN2Q5R3F8 820 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 NSMAFQ92636 917 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 NMD3Q96D46 503 aaKnown RBP17.55■□□□□ 0.4
SHMT1-209ENST00000582653 BPIFA2Q96DR5 249 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 CDH20Q9HBT6 801 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 UGT2A1Q9Y4X1 527 aa17.55■□□□□ 0.4
SHMT1-209ENST00000582653 CENPBD1B2RD01 187 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 NME4O00746 187 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 MMP7P09237 267 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 MAKP20794 623 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 MDH1P40925 334 aaKnown RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 ZNF133P52736 654 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 CDH15P55291 814 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 TMEM33P57088 247 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 TOP3AQ13472 1001 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 NRN1LQ496H8 165 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 HSP90B2PQ58FF3 399 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 ALG10Q5BKT4 473 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 C10orf128Q5T292 105 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 RGS7BPQ6MZT1 257 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 DPPA2Q7Z7J5 298 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 IGFN1Q86VF2 1251 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 CLDN22Q8N7P3 220 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 RBM15BQ8NDT2 890 aaKnown RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 CPEB3Q8NE35 698 aaKnown RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 LZICQ8WZA0 190 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 RDH5Q92781 318 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 TSPAN32Q96QS1 320 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 TXNIPQ9H3M7 391 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms