RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PLK3Q9H4B4 646 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 TRAV27A0A087WT01 109 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 FAM107AO95990 144 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 SEMG1P04279 462 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 SERPINA5P05154 406 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 CSF3P09919 207 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 TCN1P20061 433 aaPredicted RBP12.84□□□□□ -0.35
SS18-212ENST00000579061 NR4A1P22736 598 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 EFNA4P52798 201 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 MRPS34P82930 218 aaKnown RBP12.84□□□□□ -0.35
SS18-212ENST00000579061 MXRA7P84157 204 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 VLDLRP98155 873 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 MYBPC1Q00872 1141 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 DAG1Q14118 895 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 SLC36A2Q495M3 483 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 ZBED5Q49AG3 693 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 IQCCQ4KMZ1 466 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 THEM4Q5T1C6 240 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 GKAP1Q5VSY0 366 aaPredicted RBP12.84□□□□□ -0.35
SS18-212ENST00000579061 TMEM53Q6P2H8 277 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 VHLLQ6RSH7 139 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 TBPL2Q6SJ96 375 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 DEFB107AQ8IZN7 70 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 FITM2Q8N6M3 262 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 SYT14Q8NB59 555 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 OR10H5Q8NGA6 315 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 OR4K5Q8NGD3 323 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 OR51A7Q8NH64 312 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 FGFBP3Q8TAT2 258 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 MS4A3Q96HJ5 214 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 DHRS1Q96LJ7 313 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 NSMCE2Q96MF7 247 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 RBP7Q96R05 134 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 RHNO1Q9BSD3 238 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 NDEL1Q9GZM8 345 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 C1orf198Q9H425 327 aa12.84□□□□□ -0.35
SS18-212ENST00000579061 ZNF346Q9UL40 294 aaKnown RBP12.84□□□□□ -0.35
SS18-212ENST00000579061 ABCA1O95477 2261 aa12.83□□□□□ -0.35
SS18-212ENST00000579061 A6NIZ1 184 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 RNF223E7ERA6 249 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 CDC42EP2O14613 210 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 ARPC2O15144 300 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 F12P00748 615 aaPredicted RBP12.83□□□□□ -0.36
SS18-212ENST00000579061 PTHP01270 115 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 NPR2P20594 1047 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 THBS4P35443 961 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 GLRXP35754 106 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 PPOXP50336 477 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 SMIM11AP58511 58 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 RAP1BP61224 184 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 RAP1AP62834 184 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 CD47Q08722 323 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 SNTB2Q13425 540 aaKnown RBP12.83□□□□□ -0.36
SS18-212ENST00000579061 RAB39AQ14964 217 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 PODNL1Q6PEZ8 512 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 SLC25A47Q6Q0C1 308 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 CLEC2AQ6UVW9 174 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 SLC16A14Q7RTX9 510 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 ZNF584Q8IVC4 421 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 ARHGAP24Q8N264 748 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 FAM86B1Q8N7N1 296 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 CCDC197Q8NCU1 140 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 OR13C2Q8NGS9 318 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 ZNF519Q8TB69 540 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 NSL1Q96IY1 281 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 SH3GL3Q99963 347 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 SIAEQ9HAT2 523 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 KRCC1Q9NPI7 259 aaPredicted RBP12.83□□□□□ -0.36
SS18-212ENST00000579061 FKBP7Q9Y680 259 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 HIVEP2P31629 2446 aa12.83□□□□□ -0.36
SS18-212ENST00000579061 YLPM1P49750 1951 aaKnown RBP12.82□□□□□ -0.36
SS18-212ENST00000579061 hCG_2039718K7EN88 272 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 AHCYL1O43865 530 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 PTP4A3O75365 173 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 CD14P08571 375 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 PATE4P0C8F1 98 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 GPR4P46093 362 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 LIMS1P48059 325 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 EVX1P49640 407 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 RPS23P62266 143 aaKnown RBP12.82□□□□□ -0.36
SS18-212ENST00000579061 GALK2Q01415 458 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 TOP3AQ13472 1001 aaPredicted RBP12.82□□□□□ -0.36
SS18-212ENST00000579061 FGD3Q5JSP0 725 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 KRT80Q6KB66 452 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 MEX3DQ86XN8 651 aaKnown RBP12.82□□□□□ -0.36
SS18-212ENST00000579061 ARIH2OSQ8N7S6 290 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 MCUR1Q96AQ8 359 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 TSPAN32Q96QS1 320 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 DOK1Q99704 481 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 FUZQ9BT04 418 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 KCNN2Q9H2S1 579 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 RNF121Q9H920 327 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 SLC7A8Q9UHI5 535 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 CMAHPQ9Y471 501 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 UGT2A1Q9Y4X1 527 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 NAV3Q8IVL0 2385 aa12.82□□□□□ -0.36
SS18-212ENST00000579061 TMEM129A0AVI4 362 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 SLC22A23A1A5C7 686 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 B2RBV5 119 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 NDUFB2O95178 105 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms