RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 TMEM100Q9NV29 134 aa13.09□□□□□ -0.31
SMG6-215ENST00000574501 IKZF2Q9UKS7 526 aa13.09□□□□□ -0.31
SMG6-215ENST00000574501 CD74P04233 296 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 TPT1P13693 172 aaKnown RBP13.08□□□□□ -0.32
SMG6-215ENST00000574501 RPS4Y1P22090 263 aaKnown RBP13.08□□□□□ -0.32
SMG6-215ENST00000574501 ACTBP60709 375 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 ACTG1P63261 375 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 SRSF4Q08170 494 aaKnown RBP13.08□□□□□ -0.32
SMG6-215ENST00000574501 PPP1R1AQ13522 171 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 MST1LQ2TV78 715 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 LPCAT3Q6P1A2 487 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 SLC39A5Q6ZMH5 540 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 MTSS1LQ765P7 747 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 TMEM200AQ86VY9 491 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 TMEM151BQ8IW70 566 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 BAP18Q8IXM2 172 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 OR4S1Q8NGB4 309 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 OR13C8Q8NGS7 320 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 DCUN1D4Q92564 292 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 FAM3DQ96BQ1 224 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 ALG12Q9BV10 488 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 PAPOLGQ9BWT3 736 aaKnown RBP13.08□□□□□ -0.32
SMG6-215ENST00000574501 RHOFQ9HBH0 211 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 VSIG4Q9Y279 399 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 ENTPD2Q9Y5L3 495 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 EML5Q05BV3 1969 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 TRBV5-5A0A0J9YX44 114 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 C13orf42A0A1B0GVH6 325 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 AGPAT2O15120 278 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 SRPX2O60687 465 aaPredicted RBP13.08□□□□□ -0.32
SMG6-215ENST00000574501 SFTA3P0C7M3 94 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 ELNP15502 786 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 PBX2P40425 430 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 PJVKQ0ZLH3 352 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 LEG1Q6P5S2 330 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 PARGQ86W56 976 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 C12orf40Q86WS4 652 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 CRIPAKQ8N1N5 446 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 OR4E2Q8NGC2 313 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 INSM2Q96T92 566 aaPredicted RBP13.08□□□□□ -0.32
SMG6-215ENST00000574501 SLC6A7Q99884 636 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 MICU1Q9BPX6 476 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 RNF122Q9H9V4 155 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 CSAG2Q9Y5P2 127 aa13.08□□□□□ -0.32
SMG6-215ENST00000574501 MELTFP08582 738 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 TACSTD2P09758 323 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 ZNF735P0CB33 412 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 PRKAR2AP13861 404 aaKnown RBP13.07□□□□□ -0.32
SMG6-215ENST00000574501 FOLR2P14207 255 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 SELPP16109 830 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 EMDP50402 254 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 LINC01590Q5TEZ4 76 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 PAQR4Q8N4S7 273 aaPredicted RBP13.07□□□□□ -0.32
SMG6-215ENST00000574501 PLPP7Q8NBV4 271 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 OR4K17Q8NGC6 315 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 ARRDC3Q96B67 414 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 SPHK2Q9NRA0 654 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 MSRAQ9UJ68 235 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 PCDHGA1Q9Y5H4 931 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 TVP23AA6NH52 213 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 HOXA2O43364 376 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 TGM5O43548 720 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 CDC40O60508 579 aaKnown RBP eCLIP13.07□□□□□ -0.32
SMG6-215ENST00000574501 PCCBP05166 539 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 FAM157CP0CG43 387 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 CPT2P23786 658 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 TM4SF4P48230 202 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 SKP1P63208 163 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 OTPQ5XKR4 325 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 CORO6Q6QEF8 472 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 TMPPEQ6ZT21 453 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 ZNF417Q8TAU3 575 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 HIST1H2BAQ96A08 127 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 FOXRED1Q96CU9 486 aaPredicted RBP13.07□□□□□ -0.32
SMG6-215ENST00000574501 CST11Q9H112 138 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 SMCO4Q9NRQ5 59 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 TMEM74BQ9NUR3 256 aa13.07□□□□□ -0.32
SMG6-215ENST00000574501 ALPK2Q86TB3 2170 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 C5orf51A6NDU8 294 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 ZNF736B4DX44 427 aaPredicted RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 GATCO43716 136 aaKnown RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 RDH16O75452 317 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 CLN5O75503 358 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 GLCEO94923 617 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 CYB5AP00167 134 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 ZNF888P0CJ79 500 aaPredicted RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 CCR2P41597 374 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 CDKN2AP42771 156 aaKnown RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 IL13RA1P78552 427 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 EXOSC7Q15024 291 aaKnown RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 RAB11BQ15907 218 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 C9orf152Q5JTZ5 239 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 TMEM229BQ8NBD8 167 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 SLC30A7Q8NEW0 376 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 RRNAD1Q96FB5 475 aaKnown RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 WDR77Q9BQA1 342 aaPredicted RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 SRA1Q9HD15 236 aaKnown RBP13.06□□□□□ -0.32
SMG6-215ENST00000574501 OR2S2Q9NQN1 319 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 DZANK1Q9NVP4 752 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 WBP1LQ9NX94 342 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms