RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 COL6A5A8TX70 2615 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 TLN2Q9Y4G6 2542 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 B9A039 149 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 H7C417 338 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 J3KTA2 159 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 MGRN1O60291 552 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 TRMUO75648 421 aaKnown RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 PDE5AO76074 875 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 IGHV4-39P01824 125 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 HEXAP06865 529 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 H1F0P07305 194 aaKnown RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 CSF3P09919 207 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 OR4A8P0C604 315 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 PGA4P0DJD7 388 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 PGA3P0DJD8 388 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ACADSP16219 412 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ITGA2P17301 1181 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 TCN1P20061 433 aaPredicted RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 RPL4P36578 427 aaKnown RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 ACVR1BP36896 505 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 SERPINF1P36955 418 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 GUCA1AP43080 201 aaPredicted RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 GIPRP48546 466 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 SMIM11AP58511 58 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 DSCR9P59020 149 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 RAB1AP62820 205 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 PLP2Q04941 152 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 PRKCDQ05655 676 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 CD47Q08722 323 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 TOP3AQ13472 1001 aaPredicted RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 DAG1Q14118 895 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 NRN1LQ496H8 165 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 FGD3Q5JSP0 725 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 FAM205BPQ63HN1 556 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 C11orf71Q6IPW1 123 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 NHLRC1Q6VVB1 395 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 MBOAT2Q6ZWT7 520 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ZNF627Q7L945 461 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 SLC16A14Q7RTX9 510 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 OAFQ86UD1 273 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 SLC22A24Q8N4F4 322 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ANKS4BQ8N8V4 417 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 SYT14Q8NB59 555 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 CCDC197Q8NCU1 140 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 NUP37Q8NFH4 326 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 MOSPD2Q8NHP6 518 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 FNDC8Q8TC99 324 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ASB10Q8WXI3 467 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 MCHR2Q969V1 340 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 NSMCE2Q96MF7 247 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 RBP7Q96R05 134 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ZNF347Q96SE7 839 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 LRMDAQ9H2I8 198 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 TXNIPQ9H3M7 391 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 C1orf198Q9H425 327 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ZNF442Q9H7R0 627 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 GORASP2Q9H8Y8 452 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 RNF121Q9H920 327 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 DCAF13Q9NV06 445 aaKnown RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 TMEM38BQ9NVV0 291 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 SNX13Q9Y5W8 968 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 ENPP4Q9Y6X5 453 aa7.03□□□□□ -1.28
VPS53-214ENST00000572607 RAI1Q7Z5J4 1906 aaPredicted RBP7.03□□□□□ -1.28
VPS53-214ENST00000572607 A0A087WUU8 490 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 IGHV2OR16-5A0A0B4J2B6 119 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 IQCMA0A1B0GVH7 501 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 SLC22A23A1A5C7 686 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 A6NIZ1 184 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 hCG_2039718K7EN88 272 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 FFAR1O14842 300 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 STAMBPO95630 424 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 FAM107AO95990 144 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 PTHP01270 115 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 TP53P04637 393 aaPredicted RBP7.02□□□□□ -1.29
VPS53-214ENST00000572607 CELA3BP08861 270 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 HSD17B1P14061 328 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 RHCEP18577 417 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 NPR2P20594 1047 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 CALCRP30988 508 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 EFNA4P52798 201 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 CTXN1P60606 82 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 RAP1BP61224 184 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 RPL27P61353 136 aaKnown RBP7.02□□□□□ -1.29
VPS53-214ENST00000572607 RPS23P62266 143 aaKnown RBP7.02□□□□□ -1.29
VPS53-214ENST00000572607 RAP1AP62834 184 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 MYBPC1Q00872 1141 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 HSF2Q03933 536 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 SNTB2Q13425 540 aaKnown RBP7.02□□□□□ -1.29
VPS53-214ENST00000572607 TNK1Q13470 666 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 EFNB3Q15768 340 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 SPATS1Q496A3 300 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 ARMC4Q5T2S8 1044 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 KRT80Q6KB66 452 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 LRFN4Q6PJG9 635 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 SKA3Q8IX90 412 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 ALDH16A1Q8IZ83 802 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 DEFB107AQ8IZN7 70 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 FAM156AQ8NDB6 213 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 OR4K5Q8NGD3 323 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 OR1J2Q8NGS2 313 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms