RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 PLPPR2Q96GM1 343 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 FOXC2Q99958 501 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 SLCO5A1Q9H2Y9 848 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 LIME1Q9H400 295 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 EGLN3Q9H6Z9 239 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 CCNB1IP1Q9NPC3 277 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 SCN3BQ9NY72 215 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 MRPL39Q9NYK5 338 aaKnown RBP11.82□□□□□ -0.52
CLK3-218ENST00000566926 PLEKHA6Q9Y2H5 1048 aa11.82□□□□□ -0.52
CLK3-218ENST00000566926 RAI1Q7Z5J4 1906 aaPredicted RBP11.82□□□□□ -0.52
CLK3-218ENST00000566926 CSMD2Q7Z408 3487 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 LOC102725191A0A1B0GVB3 256 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 OR5H1A6NKK0 313 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 M0R082 166 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 SIAH2O43255 324 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 MRPS14O60783 128 aaKnown RBP11.81□□□□□ -0.52
CLK3-218ENST00000566926 TSPAN19P0C672 248 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 EDNRAP25101 427 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 MPGP29372 298 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 GRPRP30550 384 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 NTF4P34130 210 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 ART1P52961 327 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 GABARAPL2P60520 117 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 CDK5R2Q13319 367 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 C1DQ13901 141 aaKnown RBP11.81□□□□□ -0.52
CLK3-218ENST00000566926 PPA1Q15181 289 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 ALKBH2Q6NS38 261 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 C20orf204Q6ZNR8 217 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 ENTHD1Q8IYW4 607 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 C17orf78Q8N4C9 275 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 ZIC4Q8N9L1 334 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 C1orf162Q8NEQ5 155 aaPredicted RBP11.81□□□□□ -0.52
CLK3-218ENST00000566926 ZNF417Q8TAU3 575 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 IPCEF1Q8WWN9 437 aaPredicted RBP11.81□□□□□ -0.52
CLK3-218ENST00000566926 PLEKHA8Q96JA3 519 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 SAMD8Q96LT4 415 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 ZNF385AQ96PM9 386 aaKnown RBP11.81□□□□□ -0.52
CLK3-218ENST00000566926 ZNF587Q96SQ5 575 aaPredicted RBP11.81□□□□□ -0.52
CLK3-218ENST00000566926 PLA2G12AQ9BZM1 189 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 FN3KQ9H479 309 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 SLC7A10Q9NS82 523 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 CLN6Q9NWW5 311 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 RCE1Q9Y256 329 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 TPRKBQ9Y3C4 175 aa11.81□□□□□ -0.52
CLK3-218ENST00000566926 PRRC2AP48634 2157 aaKnown RBP11.81□□□□□ -0.52
CLK3-218ENST00000566926 TRAV27A0A087WT01 109 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 TRIM64A6NGJ6 449 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 RIIAD1A6NNX1 92 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 BHLHE40O14503 412 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 IMPA2O14732 288 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 ARPC3O15145 178 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 RAD51DO75771 328 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 OR6A2O95222 327 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 BGLAPP02818 100 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 CD3EP07766 207 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 ZNF3P17036 446 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 PAX7P23759 505 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 HOXC12P31275 282 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 TUBA4AP68366 448 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 MYBPC1Q00872 1141 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 PMS2P3Q13401 168 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 SNAPC1Q16533 368 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 ACKR1Q16570 336 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 OCLNQ16625 522 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 CLEC12AQ5QGZ9 265 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 TSPO2Q5TGU0 170 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 NIPAL3Q6P499 406 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 SPNS3Q6ZMD2 512 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 LURAP1LQ8IV03 231 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 OR8D4Q8NGM9 314 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 OR5J2Q8NH18 312 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 OR51A7Q8NH64 312 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 RFKQ969G6 155 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 PIGTQ969N2 578 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 TNFRSF13CQ96RJ3 184 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 IFT27Q9BW83 186 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 LINC00470Q9BZP3 86 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 PLCXD1Q9NUJ7 323 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 TVP23BQ9NYZ1 205 aa11.8□□□□□ -0.52
CLK3-218ENST00000566926 PLCE1Q9P212 2302 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 A0A1W2PPR1 153 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 IRGMA1A4Y4 181 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 NPIPB13A6NJU9 1138 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 NPIPB4C9JG80 1138 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 ZNF587BE7ETH6 402 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 SURF4O15260 269 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 SLC43A1O75387 559 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 ATE1O95260 518 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 CD14P08571 375 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 GABRB1P18505 474 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 PTNP21246 168 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 PAICSP22234 425 aaKnown RBP11.79□□□□□ -0.52
CLK3-218ENST00000566926 CRHBPP24387 322 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 LOXP28300 417 aaPredicted RBP11.79□□□□□ -0.52
CLK3-218ENST00000566926 NOS3P29474 1203 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 RPL4P36578 427 aaKnown RBP11.79□□□□□ -0.52
CLK3-218ENST00000566926 CLDN17P56750 224 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 FHL1Q13642 323 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 TESK1Q15569 626 aa11.79□□□□□ -0.52
CLK3-218ENST00000566926 GABRA6Q16445 453 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms