RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CLEC4MQ9H2X3 399 aaPredicted RBP17.07■□□□□ 0.32
CLN3-225ENST00000566824 LIME1Q9H400 295 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 SEC61A2Q9H9S3 476 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 TMEM38BQ9NVV0 291 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 RAI1Q7Z5J4 1906 aaPredicted RBP17.06■□□□□ 0.32
CLN3-225ENST00000566824 ARPC4-TTLL3A0A0A6YYG9 625 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 PRSS37A4D1T9 235 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 BHLHE40O14503 412 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 HLA-HP01893 362 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 SCG5P05408 212 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 PATE4P0C8F1 98 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 HIST1H1CP16403 213 aaKnown RBP17.06■□□□□ 0.32
CLN3-225ENST00000566824 BSPH1Q075Z2 132 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 SPOCK1Q08629 439 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 BEX5Q5H9J7 111 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 SLC35F1Q5T1Q4 408 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 NCMAPQ5T1S8 102 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 GPR139Q6DWJ6 353 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 SKA3Q8IX90 412 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 OR5K1Q8NHB7 308 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 SH3GL3Q99963 347 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 NDEL1Q9GZM8 345 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 STX18Q9P2W9 335 aaKnown RBP17.06■□□□□ 0.32
CLN3-225ENST00000566824 AMDHD2Q9Y303 409 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 ANKRD17O75179 2603 aaKnown RBP17.06■□□□□ 0.32
CLN3-225ENST00000566824 TEX15Q9BXT5 2789 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 PLCE1Q9P212 2302 aa17.06■□□□□ 0.32
CLN3-225ENST00000566824 NAV2Q8IVL1 2488 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 M0R1B8 84 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 ARPC3O15145 178 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 CELA3BP08861 270 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 APEHP13798 732 aaKnown RBP17.05■□□□□ 0.32
CLN3-225ENST00000566824 CTLA4P16410 223 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 GSTM3P21266 225 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 DAPP51397 102 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 RPS6KA3P51812 740 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 SLC36A3Q495N2 470 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 OTPQ5XKR4 325 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 FAHD1Q6P587 224 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 MDP1Q86V88 176 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 SLC22A24Q8N4F4 322 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 IQCF1Q8N6M8 205 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 OR4K13Q8NH42 304 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 LILRB1Q8NHL6 650 aaPredicted RBP17.05■□□□□ 0.32
CLN3-225ENST00000566824 NEUROG1Q92886 237 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 NABP1Q96AH0 204 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 LURAP1Q96LR2 239 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 TSSK2Q96PF2 358 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 TSSK6Q9BXA6 273 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 SYT4Q9H2B2 425 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 SMURF2Q9HAU4 748 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 TBC1D23Q9NUY8 699 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 B3GNT2Q9NY97 397 aa17.05■□□□□ 0.32
CLN3-225ENST00000566824 VSX1Q9NZR4 365 aaPredicted RBP17.05■□□□□ 0.32
CLN3-225ENST00000566824 RTTNQ86VV8 2226 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 DCTN6O00399 190 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 XKRYO14609 159 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 MITFO75030 526 aaPredicted RBP17.04■□□□□ 0.32
CLN3-225ENST00000566824 UBE2NP61088 152 aaKnown RBP17.04■□□□□ 0.32
CLN3-225ENST00000566824 PIGFQ07326 219 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 ZNF362Q5T0B9 420 aaPredicted RBP17.04■□□□□ 0.32
CLN3-225ENST00000566824 THEM4Q5T1C6 240 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 FBXW10Q5XX13 1052 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 NRBF2Q96F24 287 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 RBP7Q96R05 134 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 NMNAT3Q96T66 252 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 TMEM204Q9BSN7 226 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 FN3KQ9H479 309 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 PLEKHF2Q9H8W4 249 aa17.04■□□□□ 0.32
CLN3-225ENST00000566824 IGHV1-18A0A0C4DH31 117 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 ERICH4A6NGS2 130 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 SAC3D1A6NKF1 404 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 GPANK1O95872 356 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 HOXC12P31275 282 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 CAPZA2P47755 286 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 ZNF84P51523 738 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 LEG1Q6P5S2 330 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 ATG16L2Q8NAA4 619 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 SDR9C7Q8NEX9 313 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 ZNF75AQ96N20 296 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 DDOQ99489 341 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 BDH2Q9BUT1 245 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 NUAK2Q9H093 628 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 RERGLQ9H628 205 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 S100A14Q9HCY8 104 aa17.03■□□□□ 0.32
CLN3-225ENST00000566824 OR6C68A6NDL8 312 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 G3V2T6 193 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 SLC16A7O60669 478 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 WNT11O96014 354 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 CD79AP11912 226 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 FCGR1AP12314 374 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 ANXA8P13928 327 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 HOXB1P14653 301 aaPredicted RBP17.02■□□□□ 0.32
CLN3-225ENST00000566824 ZNF23P17027 643 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 CD40P25942 277 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-225ENST00000566824 COX10Q12887 443 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 SGCAQ16586 387 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 RPL13AP3Q6NVV1 102 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 ADAM5Q6NVV9 412 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms