RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SEC24CP53992 1094 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 LIPEQ05469 1076 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 FMODQ06828 376 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 ST3GAL3Q11203 375 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 FHL1Q13642 323 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 RIN1Q13671 783 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 MAD2L1BPQ15013 274 aaPredicted RBP9.3□□□□□ -0.92
VPS39-208ENST00000564994 IQCCQ4KMZ1 466 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 C10orf128Q5T292 105 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 GKAP1Q5VSY0 366 aaPredicted RBP9.3□□□□□ -0.92
VPS39-208ENST00000564994 PODNL1Q6PEZ8 512 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 SLC16A14Q7RTX9 510 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 MEX3DQ86XN8 651 aaKnown RBP9.3□□□□□ -0.92
VPS39-208ENST00000564994 TREML1Q86YW5 311 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 ZNF786Q8N393 782 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 SLC30A7Q8NEW0 376 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 RHCGQ9UBD6 479 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 SLC7A8Q9UHI5 535 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 CDC42EP3Q9UKI2 254 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 FBXL3Q9UKT7 428 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 HIF3AQ9Y2N7 669 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 SPEF1Q9Y4P9 236 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 UGT2A1Q9Y4X1 527 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 LOC100289279A0A1B0GTE1 492 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 NPIPB13A6NJU9 1138 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 CENPBD1B2RD01 187 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 NPIPB4C9JG80 1138 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 M0R233 179 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 SYNGR3O43761 229 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 FARS2O95363 451 aaKnown RBP9.29□□□□□ -0.92
VPS39-208ENST00000564994 HPXP02790 462 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 ERCC1P07992 297 aaPredicted RBP9.29□□□□□ -0.92
VPS39-208ENST00000564994 TACSTD2P09758 323 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 FAM157BP0CG42 384 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 IFI30P13284 250 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 TCN1P20061 433 aaPredicted RBP9.29□□□□□ -0.92
VPS39-208ENST00000564994 MAKP20794 623 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 DAP3P51398 398 aaKnown RBP9.29□□□□□ -0.92
VPS39-208ENST00000564994 ZNF84P51523 738 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 SLC7A2P52569 658 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 ERVS71-1P61550 626 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 GALK2Q01415 458 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 TRIP10Q15642 601 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 NRN1LQ496H8 165 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 ELFN2Q5R3F8 820 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 TMEM53Q6P2H8 277 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 IL17RELQ6ZVW7 336 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 ARPINQ7Z6K5 226 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 IGFN1Q86VF2 1251 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 NRMQ8IXM6 262 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 OFCC1Q8IZS5 231 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 LRRC18Q8N456 261 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 CLDN22Q8N7P3 220 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 LRRC75AQ8NAA5 344 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 ZNF540Q8NDQ6 660 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 UBASH3BQ8TF42 649 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 NABP1Q96AH0 204 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 BPIFA2Q96DR5 249 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 OR51B6Q9H340 312 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 TXNIPQ9H3M7 391 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 RNF121Q9H920 327 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 CHODLQ9H9P2 273 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 REV1Q9UBZ9 1251 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 DUSP13Q9UII6 198 aa9.29□□□□□ -0.92
VPS39-208ENST00000564994 FBN3Q75N90 2809 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 CXCR6O00574 342 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 MGRN1O60291 552 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 ENTPD5O75356 428 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 NCR1O76036 304 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 PRSS23O95084 383 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 ZNF682O95780 498 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 CLPTM1O96005 669 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 NAT2P11245 290 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 COL8A2P25067 703 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 GSK3BP49841 420 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 RPS23P62266 143 aaKnown RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 MRPS34P82930 218 aaKnown RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 TOP3AQ13472 1001 aaPredicted RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 ALKBH6Q3KRA9 238 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 SLC36A2Q495M3 483 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 HSP90B2PQ58FF3 399 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 ALG10Q5BKT4 473 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 FAM166AQ6J272 317 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 SLC25A47Q6Q0C1 308 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 CBLL1Q75N03 491 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 TSEN54Q7Z6J9 526 aaKnown RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 DPPA2Q7Z7J5 298 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 RBM15BQ8NDT2 890 aaKnown RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 CPEB3Q8NE35 698 aaKnown RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 LZICQ8WZA0 190 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 TSPAN32Q96QS1 320 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 HOPXQ9BPY8 73 aaPredicted RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 BEX2Q9BXY8 128 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 MS4A5Q9H3V2 200 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 SIAEQ9HAT2 523 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 MED4Q9NPJ6 270 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 ZNF346Q9UL40 294 aaKnown RBP9.28□□□□□ -0.92
VPS39-208ENST00000564994 KCNS2Q9ULS6 477 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 AP3M1Q9Y2T2 418 aa9.28□□□□□ -0.92
VPS39-208ENST00000564994 TRAV27A0A087WT01 109 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms