RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 OR6C76A6NM76 312 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 TBL1XO60907 577 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 YIF1AO95070 293 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 RAB7AP51149 207 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 ZNF140P52738 457 aaPredicted RBP5.78□□□□□ -1.48
CLK3-212ENST00000563418 C12orf54Q6X4T0 127 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 LAS2Q8IYD9 372 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 OR52E2Q8NGJ4 325 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 FZD8Q9H461 694 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 PLEKHA3Q9HB20 300 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 SRA1Q9HD15 236 aaKnown RBP5.78□□□□□ -1.48
CLK3-212ENST00000563418 ACER3Q9NUN7 267 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 TINAGQ9UJW2 476 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 HHLA2Q9UM44 414 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 LAMP3Q9UQV4 416 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 H3BRB1 525 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 DNASE2O00115 360 aaPredicted RBP5.78□□□□□ -1.48
CLK3-212ENST00000563418 CLDN5O00501 218 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 HTR6P50406 440 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 KLF3P57682 345 aaPredicted RBP5.78□□□□□ -1.48
CLK3-212ENST00000563418 RABEPKQ7Z6M1 372 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 LCN9Q8WX39 176 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 LMF1Q96S06 567 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.78□□□□□ -1.48
CLK3-212ENST00000563418 OR5AC2Q9NZP5 309 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 WSB1Q9Y6I7 421 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 DDX60Q8IY21 1712 aaKnown RBP5.78□□□□□ -1.48
CLK3-212ENST00000563418 MAN2B1O00754 1011 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 POP4O95707 220 aaKnown RBP5.78□□□□□ -1.48
CLK3-212ENST00000563418 KITLGP21583 273 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 FCGR2CP31995 323 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 CD68P34810 354 aaPredicted RBP5.78□□□□□ -1.48
CLK3-212ENST00000563418 DHODHQ02127 395 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 DPPA3Q6W0C5 159 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 MBOAT2Q6ZWT7 520 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 OR5D14Q8NGL3 314 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 CLEC4CQ8WTT0 213 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 TSSK2Q96PF2 358 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 NAGKQ9UJ70 344 aa5.78□□□□□ -1.48
CLK3-212ENST00000563418 NPIPA5E9PKD4 350 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 FAM227AF5H4B4 570 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 NPIPA3F8WFD2 350 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 PIRO00625 290 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MAFKO60675 156 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 SOCS5O75159 536 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MPC2O95563 127 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MMP10P09238 476 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 PGCP20142 388 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 BSGP35613 385 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 NTMQ9P121 344 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 NPIPA1Q9UND3 350 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TRIP11Q15643 1979 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 PYCARD-AS1I3L0S3 204 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 ADH5P11766 374 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TRHRP34981 398 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 GABREP78334 506 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 LMAN2Q12907 356 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 SLC25A30Q5SVS4 291 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 DMRTA1Q5VZB9 504 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 FA2HQ7L5A8 372 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 REEP6Q96HR9 211 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 GPR174Q9BXC1 333 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 KLHL13Q9P2N7 655 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MIA3Q5JRA6 1907 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 C1orf226A1L170 272 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 IQCF5A8MTL0 148 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 OR10J4P0C629 311 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 GALR1P47211 349 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 KRTDAPP60985 99 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TRA2BP62995 288 aaKnown RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 SMAD2Q15796 467 aaKnown RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 TMEM128Q5BJH2 165 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 GKN2Q86XP6 184 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 VRK2Q86Y07 508 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 OR52R1Q8NGF1 315 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 WRAP73Q9P2S5 460 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 CICQ96RK0 1608 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 MAP1LC3B2A6NCE7 125 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 HOXB5P09067 269 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TNFRSF1BP20333 461 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 PAX5Q02548 391 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 LCN10Q6JVE6 187 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 CMTM4Q8IZR5 234 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MAP1LC3BQ9GZQ8 125 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 SERINC1Q9NRX5 453 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TOPAZ1Q8N9V7 1692 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TMEM265A0A087WTH1 108 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 A0A1W2PQH9 124 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TNFSF4P23510 183 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 WDR74Q6RFH5 385 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 OR4C16Q8NGL9 310 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 OR51A7Q8NH64 312 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 EHFQ9NZC4 300 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 FOXJ2Q9P0K8 574 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 DUXBA0A1W2PPF3 345 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TP53I11O14683 189 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 NKAIN4Q8IVV8 208 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MUC20Q8N307 709 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 KCNG3Q8TAE7 436 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 UBE2FQ969M7 185 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms