RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 KLF10Q13118 480 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 TOP3AQ13472 1001 aaPredicted RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 PIN1Q13526 163 aaPredicted RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 CYLC2Q14093 348 aaPredicted RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 MMEL1Q495T6 779 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 PIWIL3Q7Z3Z3 882 aaKnown RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 LRRC18Q8N456 261 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 ICA1LQ8NDH6 482 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 SEMA6DQ8NFY4 1073 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 GTF3AQ92664 365 aaKnown RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 YIPF5Q969M3 257 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 MCHR2Q969V1 340 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 SGTBQ96EQ0 304 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 ECSITQ9BQ95 431 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 METTL17Q9H7H0 456 aaPredicted RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 RNF121Q9H920 327 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 ARGLU1Q9NWB6 273 aaPredicted RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 SLC7A8Q9UHI5 535 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 IGKV1D-43A0A0B4J1Z2 117 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 WNT9BO14905 357 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 CLPTM1O96005 669 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 MT-ND1P03886 318 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 SERPINA5P05154 406 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 LSP1P33241 339 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 SLC16A14Q7RTX9 510 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 OR8J3Q8NGG0 315 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 CDH20Q9HBT6 801 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 LPAR2Q9HBW0 351 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 RIMS3Q9UJD0 308 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 DYSFO75923 2080 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 TANC2Q9HCD6 1990 aa16.26■□□□□ 0.19
VPS35-202ENST00000561713 A0A1W2PRG6 482 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 TRMUO75648 421 aaKnown RBP16.25■□□□□ 0.19
VPS35-202ENST00000561713 OR5F1O95221 314 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 FARS2O95363 451 aaKnown RBP16.25■□□□□ 0.19
VPS35-202ENST00000561713 TROVE2P10155 538 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS35-202ENST00000561713 COL8A2P25067 703 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 CDAP32320 146 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 MAGEB1P43366 347 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 NKPD1Q17RQ9 610 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 CYBRD1Q53TN4 286 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 METTL21CQ5VZV1 264 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 RGS7BPQ6MZT1 257 aaPredicted RBP16.25■□□□□ 0.19
VPS35-202ENST00000561713 TMEM53Q6P2H8 277 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 CLDN22Q8N7P3 220 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 TMEM239Q8WW34 195 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 RASSF5Q8WWW0 418 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 TPD52L3Q96J77 140 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 ZNF583Q96ND8 569 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 SAR1AQ9NR31 198 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 INIPQ9NRY2 104 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 BAG5Q9UL15 447 aa16.25■□□□□ 0.19
VPS35-202ENST00000561713 PKD1L1Q8TDX9 2849 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 B4DSR2 109 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 RGS9O75916 674 aaPredicted RBP16.24■□□□□ 0.19
VPS35-202ENST00000561713 LCKP06239 509 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 GPR6P46095 362 aaPredicted RBP16.24■□□□□ 0.19
VPS35-202ENST00000561713 EVX1P49640 407 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 ARFIP2P53365 341 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 UGT2A3Q6UWM9 527 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 IGFN1Q86VF2 1251 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 MICU2Q8IYU8 434 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 POU5F2Q8N7G0 328 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 RBM15BQ8NDT2 890 aaKnown RBP16.24■□□□□ 0.19
VPS35-202ENST00000561713 CLDND2Q8NHS1 167 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 ZFAND2BQ8WV99 257 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 C10orf82Q8WW14 230 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 NSMAFQ92636 917 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 HDAC2Q92769 488 aaKnown RBP16.24■□□□□ 0.19
VPS35-202ENST00000561713 MRPL13Q9BYD1 178 aaKnown RBP16.24■□□□□ 0.19
VPS35-202ENST00000561713 DENND2DQ9H6A0 471 aaPredicted RBP16.24■□□□□ 0.19
VPS35-202ENST00000561713 ZNF275Q9NSD4 429 aaPredicted RBP16.24■□□□□ 0.19
VPS35-202ENST00000561713 TAAR3PQ9P1P4 343 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 ARMCX1Q9P291 453 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 FBXL3Q9UKT7 428 aa16.24■□□□□ 0.19
VPS35-202ENST00000561713 MGAM2Q2M2H8 2515 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 A0A0A6YYJ9 748 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 LOC100653049A0A140TA62 436 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 FAM220BPB1ANY3 271 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 CDC14BO60729 498 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 KRT34O76011 436 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 SAGP10523 405 aaPredicted RBP16.23■□□□□ 0.19
VPS35-202ENST00000561713 ACADSP16219 412 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 EGR1P18146 543 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 PCMT1P22061 227 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 RBM34P42696 430 aaKnown RBP16.23■□□□□ 0.19
VPS35-202ENST00000561713 YAP1P46937 504 aaKnown RBP16.23■□□□□ 0.19
VPS35-202ENST00000561713 DAP3P51398 398 aaKnown RBP16.23■□□□□ 0.19
VPS35-202ENST00000561713 ZNF84P51523 738 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 CD47Q08722 323 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 HIST3H3Q16695 136 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 SLC36A2Q495M3 483 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 GLCCI1Q86VQ1 547 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 RCN3Q96D15 328 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 SEPHS2Q99611 448 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 SH3GL1Q99961 368 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 MS4A5Q9H3V2 200 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 RHCGQ9UBD6 479 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 UGT2A1Q9Y4X1 527 aa16.23■□□□□ 0.19
VPS35-202ENST00000561713 ARHGAP32A7KAX9 2087 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms