RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PI3P19957 117 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 MYF6P23409 242 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 ELAVL4P26378 380 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 EVI2BP34910 448 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 RYKP34925 604 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 EIF2S3P41091 472 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 EIF1P41567 113 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 SLC1A3P43003 542 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 YAP1P46937 504 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 GPR12P47775 334 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SLC9A3P48764 834 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 NUP107P57740 925 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 MLF1P58340 268 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 CDC42P60953 191 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 CXCR4P61073 352 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 TSPAN31Q12999 210 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 LY6DQ14210 128 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 GANABQ14697 944 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 MFSD13AQ14CX5 517 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 PDK3Q15120 406 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 MAPK14Q16539 360 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 EXOC3L2Q2M3D2 409 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 TMEM44Q2T9K0 475 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SLC36A3Q495N2 470 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 GLYR1Q49A26 553 aaPredicted RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 ALG10BQ5I7T1 473 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 ABHD17BQ5VST6 288 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 FAM69BQ5VUD6 431 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SLC22A10Q63ZE4 541 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 H3F3CQ6NXT2 135 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 FAHD1Q6P587 224 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 VWA1Q6PCB0 445 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 RTL4Q6ZR62 310 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 MBOAT2Q6ZWT7 520 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 GALNT10Q86SR1 603 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 APLFQ8IW19 511 aaPredicted RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 UEVLDQ8IX04 471 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 CLDN22Q8N7P3 220 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 ZNF321PQ8N8H1 164 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 LINC01356Q8N9X3 169 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR4N2Q8NGD1 307 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR4C15Q8NGM1 316 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR10Q1Q8NGQ4 319 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR4C3Q8NH37 302 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR6S1Q8NH40 331 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR52J3Q8NH60 311 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR5W2Q8NH69 310 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 DOK4Q8TEW6 326 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 TMEM239Q8WW34 195 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 CYGBQ8WWM9 190 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 ST8SIA1Q92185 356 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OSTF1Q92882 214 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 MIB2Q96AX9 1013 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 EFHD2Q96C19 240 aaPredicted RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 C8orf44Q96CB5 159 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 Q96MT0 163 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 RASL10BQ96S79 203 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 FEVQ99581 238 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 TMEM43Q9BTV4 400 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 C1QTNF5Q9BXJ0 243 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 ANKRD60Q9BZ19 345 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 LHPPQ9H008 270 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 NUAK2Q9H093 628 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 ING2Q9H160 280 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 METTL7AQ9H8H3 244 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 AKIRIN1Q9H9L7 192 aaPredicted RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 ZNF160Q9HCG1 818 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 BATF3Q9NR55 127 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SERINC1Q9NRX5 453 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 PNPLA3Q9NST1 481 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 FAM118AQ9NWS6 357 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SCN3BQ9NY72 215 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 KLRF1Q9NZS2 232 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 FOXJ2Q9P0K8 574 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 BAIAP2Q9UQB8 552 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 GMPPBQ9Y5P6 360 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SPIN1Q9Y657 262 aaPredicted RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 TNRC6BQ9UPQ9 1833 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 PCM1Q15154 2024 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 DOCK9Q9BZ29 2069 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 A0A087WUJ7 227 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 IGLV3-32A0A0A0MS00 114 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 A0A0B4J2E0 115 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 LOC101059948A0A1B0GTJ6 334 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 A0A1B0GX12 115 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 IRGMA1A4Y4 181 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 ANKUB1A6NFN9 424 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 SPRY1O43609 319 aaPredicted RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 BCAS1O75363 584 aaPredicted RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 OR2J2O76002 312 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 NUDT14O95848 222 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 IGKV1D-16P01601 117 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 P04436 131 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 LCKP06239 509 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 CCNA2P20248 432 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 TNFRSF1BP20333 461 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 PRKACGP22612 351 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 CBLP22681 906 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 CXCR1P25024 350 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 FPR3P25089 353 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms