RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CALCBP10092 127 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 CTLA4P16410 223 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 CXCR1P25024 350 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 ACKR1Q16570 336 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 DCAF12L2Q5VW00 463 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 OR10K2Q6IF99 312 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 C9orf40Q8IXQ3 194 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 OR51S1Q8NGJ8 323 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 GPR119Q8TDV5 335 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 RAB40AQ8WXH6 277 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 C4orf45Q96LM5 186 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 KLHL15Q96M94 604 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 EVA1AQ9H8M9 152 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 MRPL22Q9NWU5 206 aaKnown RBP11.63□□□□□ -0.55
LDLR-207ENST00000558013 PLCL2Q9UPR0 1127 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 ASCC3Q8N3C0 2202 aaKnown RBP11.63□□□□□ -0.55
LDLR-207ENST00000558013 TRBV5-7A0A0A0MS05 114 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 CTAG2O75638 210 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 NDUFB6O95139 128 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 INSM1Q01101 510 aaPredicted RBP11.63□□□□□ -0.55
LDLR-207ENST00000558013 OPCMLQ14982 345 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 C2orf76Q3KRA6 126 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 OTOSQ8NHW6 89 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 GPR148Q8TDV2 347 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 ZNF721Q8TF20 911 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 LIPHQ8WWY8 451 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 TTC9Q92623 222 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 LCORQ96JN0 433 aaPredicted RBP11.63□□□□□ -0.55
LDLR-207ENST00000558013 CMTM3Q96MX0 182 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 GINS4Q9BRT9 223 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 ADAM19Q9H013 955 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 UBQLN2Q9UHD9 624 aa11.63□□□□□ -0.55
LDLR-207ENST00000558013 IGHV3-20A0A0C4DH32 117 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 H0YIG0 161 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 LMX1BO60663 402 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 ZNF254O75437 659 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 TXNDC12O95881 172 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 CD3DP04234 171 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 AP3S2P59780 193 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 ELFN2Q5R3F8 820 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 KCTD20Q7Z5Y7 419 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 CDH24Q86UP0 819 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 OR51A2Q8NGJ7 313 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 METTL21AQ8WXB1 218 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 MCHR2Q969V1 340 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 DUSP15Q9H1R2 295 aaPredicted RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 PDE7BQ9NP56 450 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 GPR27Q9NS67 375 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 CGGBP1Q9UFW8 167 aaPredicted RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 STEAP1Q9UHE8 339 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 FBXL3Q9UKT7 428 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 COL6A3P12111 3177 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 PLSCR5A0PG75 271 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 GGT3PA6NGU5 568 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 TMEM150CB9EJG8 249 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 ARPC5O15511 151 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 RBBP9O75884 186 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 RENP00797 406 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 BGLAPP02818 100 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 IGKV3-11P04433 115 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 IFNGR1P15260 489 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 B3GNTL1Q67FW5 361 aaPredicted RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 OLFML2AQ68BL7 652 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 ZNF440Q8IYI8 595 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 STK35Q8TDR2 534 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 PTDSS2Q9BVG9 487 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 COMMD4Q9H0A8 199 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 CUTCQ9NTM9 273 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 ZNF224Q9NZL3 707 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 AKAP7Q9P0M2 348 aaPredicted RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 TMEM131Q92545 1883 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 COL4A2P08572 1712 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 XRCC3O43542 346 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 CREBL2O60519 120 aaPredicted RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 IFNA7P01567 189 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 APEHP13798 732 aaKnown RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 RORAP35398 523 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 SKP1P63208 163 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 NSDHLQ15738 373 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 ZNF626Q68DY1 528 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 ALKAL2Q6UX46 152 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 MUC20Q8N307 709 aaPredicted RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 THAP3Q8WTV1 239 aaPredicted RBP11.62□□□□□ -0.55
LDLR-207ENST00000558013 ZNF285Q96NJ3 590 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 DCBLD2Q96PD2 775 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 MSRAQ9UJ68 235 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 RNF215Q9Y6U7 377 aa11.62□□□□□ -0.55
LDLR-207ENST00000558013 LOC101059948A0A1B0GTJ6 334 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 A0A1W2PPL8 197 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 H7C417 338 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 XKRYO14609 159 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 GTF2F2P13984 249 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 MAPK3P27361 379 aaPredicted RBP11.61□□□□□ -0.55
LDLR-207ENST00000558013 BLKP51451 505 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 LANCL3Q6ZV70 420 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 ZNF227Q86WZ6 799 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 MTFP1Q9UDX5 166 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 AUP1Q9Y679 476 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 DCDC2BA2VCK2 349 aa11.61□□□□□ -0.55
LDLR-207ENST00000558013 TMEM212A6NML5 194 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms