RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 UGT2B15P54855 530 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 KLF3P57682 345 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-235ENST00000557740 HSF2Q03933 536 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 NRN1LQ496H8 165 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 LRRC23Q53EV4 343 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-235ENST00000557740 ELFN2Q5R3F8 820 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 CALHM3Q86XJ0 350 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 NKAIN4Q8IVV8 208 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 SYT14Q8NB59 555 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 ICA1LQ8NDH6 482 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 OR1J2Q8NGS2 313 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 SNX33Q8WV41 574 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 TMEM239Q8WW34 195 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 ASB10Q8WXI3 467 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 MCHR2Q969V1 340 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 ZNF347Q96SE7 839 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 C19orf24Q9BVV8 132 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 LRMDAQ9H2I8 198 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 OR51B6Q9H340 312 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 NARFLQ9H6Q4 476 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 TMEFF2Q9UIK5 374 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-235ENST00000557740 SHOX2O60902 331 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-235ENST00000557740 SNAP29O95721 258 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 NPPAP01160 153 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 IGF2P01344 180 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 LCKP06239 509 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 SAGP10523 405 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-235ENST00000557740 NAT2P11245 290 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 NR2C1P13056 603 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 CCL2P13500 99 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 FUT1P19526 365 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 AQP2P41181 271 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 RUNX1T1Q06455 604 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 PIN1Q13526 163 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-235ENST00000557740 ALKBH6Q3KRA9 238 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 LIPNQ5VXI9 398 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 TMEM154Q6P9G4 183 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 GLCCI1Q86VQ1 547 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 PAQR4Q8N4S7 273 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-235ENST00000557740 ZNF416Q9BWM5 594 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 KCNN2Q9H2S1 579 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 CCNB1IP1Q9NPC3 277 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 C20orf141Q9NUB4 165 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 TAAR3PQ9P1P4 343 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 RIMS3Q9UJD0 308 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 MED31Q9Y3C7 131 aa12.55□□□□□ -0.4
SHMT2-235ENST00000557740 CUBNO60494 3623 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 FAM220BPB1ANY3 271 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 B4DSR2 109 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 PPIHO43447 177 aaKnown RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 TRMUO75648 421 aaKnown RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 NCR1O76036 304 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 TFP02787 698 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 THRBP10828 461 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 H2AFXP16104 143 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 ACADSP16219 412 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 IFNA8P32881 189 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 APLNRP35414 380 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 RAD52P43351 418 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 OR1E2P47887 323 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 ARFIP2P53365 341 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 DVL1P1P54792 670 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 MRPS11P82912 194 aaKnown RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 SRSF2Q01130 221 aaKnown RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 CD47Q08722 323 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 KLF10Q13118 480 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 HIST3H3Q16695 136 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 CYBRD1Q53TN4 286 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 C10orf128Q5T292 105 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 RINLQ6ZS11 566 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 LRRC18Q8N456 261 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 PCYOX1LQ8NBM8 494 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 MOSPD2Q8NHP6 518 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 CLDND2Q8NHS1 167 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 SYNPRQ8TBG9 265 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 C11orf40Q8WZ69 217 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 C1orf159Q96HA4 380 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 TPD52L3Q96J77 140 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 SEPHS2Q99611 448 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 MRPL13Q9BYD1 178 aaKnown RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 BCL2L14Q9BZR8 327 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 HINT3Q9NQE9 182 aaKnown RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 ZNF275Q9NSD4 429 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-235ENST00000557740 FGFR1OP2Q9NVK5 253 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 GID8Q9NWU2 228 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 SLCO1C1Q9NYB5 712 aa12.54□□□□□ -0.4
SHMT2-235ENST00000557740 GMNCA6NCL1 334 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 NPIPB13A6NJU9 1138 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 NPIPB4C9JG80 1138 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 MGRN1O60291 552 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 SLC2A10O95528 541 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 CLPTM1O96005 669 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 MT-ND5P03915 603 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 COL8A2P25067 703 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 TMEM33P57088 247 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 ERVS71-1P61550 626 aa12.53□□□□□ -0.4
SHMT2-235ENST00000557740 MRPS34P82930 218 aaKnown RBP12.53□□□□□ -0.4
SHMT2-235ENST00000557740 SF3A3Q12874 501 aaKnown RBP eCLIP12.53□□□□□ -0.41e-13■■■□□ 16.4
SHMT2-235ENST00000557740 TOP3AQ13472 1001 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-235ENST00000557740 OR2T12Q8NG77 320 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms