RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RPL13AP3Q6NVV1 102 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 SLC22A24Q8N4F4 322 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 CLDN22Q8N7P3 220 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 OR52L1Q8NGH7 329 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 NSMAFQ92636 917 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 GTPBP3Q969Y2 492 aaKnown RBP11.86□□□□□ -0.51
SHMT2-228ENST00000557302 RASD2Q96D21 266 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 SAMD8Q96LT4 415 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 IFT27Q9BW83 186 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 DGCR6LQ9BY27 220 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 LIME1Q9H400 295 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 MGAT4BQ9UQ53 548 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 SLC22A23A1A5C7 686 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 PRSS37A4D1T9 235 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 SOCS2O14508 198 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 AHCYL1O43865 530 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 TIPRLO75663 272 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 TXNDC12O95881 172 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 HLA-HP01893 362 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 OR8G3PP0DMU2 310 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 CD79AP11912 226 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 CBR1P16152 277 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 NRN1LQ496H8 165 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 ADAM5Q6NVV9 412 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 SLC25A47Q6Q0C1 308 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 PAMR1Q6UXH9 720 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 RASSF6Q6ZTQ3 369 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 ADCK1Q86TW2 530 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 MDP1Q86V88 176 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 DEPDC4Q8N2C3 294 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 FAM169BQ8N8A8 192 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 KBTBD8Q8NFY9 601 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 AKAP1Q92667 903 aaKnown RBP eCLIP11.85□□□□□ -0.51
SHMT2-228ENST00000557302 RADILQ96JH8 1075 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 ERMAPQ96PL5 475 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-228ENST00000557302 SLC38A2Q96QD8 506 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 EGLN3Q9H6Z9 239 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 PDP1Q9P0J1 537 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-228ENST00000557302 CRNNQ9UBG3 495 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-228ENST00000557302 ST6GALNAC2Q9UJ37 374 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 AP4S1Q9Y587 144 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 PDZD2O15018 2839 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 CREBBPQ92793 2442 aa11.85□□□□□ -0.51
SHMT2-228ENST00000557302 IGKV1D-43A0A0B4J1Z2 117 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 IGHV1-18A0A0C4DH31 117 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF503-AS2A6NEH8 195 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 IMPA2O14732 288 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 HS3ST1O14792 307 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 ARPC3O15145 178 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 UBL3O95164 117 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 RAB36O95755 333 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 IGKV3-15P01624 115 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 RAF1P04049 648 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 NPR2P20594 1047 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 DNASE1P24855 282 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 ARR3P36575 388 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 GUCA1AP43080 201 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-228ENST00000557302 IDH3GP51553 393 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-228ENST00000557302 ARHGDIAP52565 204 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 CDH11P55287 796 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 MRPS34P82930 218 aaKnown RBP11.84□□□□□ -0.51
SHMT2-228ENST00000557302 SPOCK1Q08629 439 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 NPRL3Q12980 569 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 KEAP1Q14145 624 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 GSG1Q2KHT4 349 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 C3orf36Q3SXR2 165 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 CLEC12AQ5QGZ9 265 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 SLC22A25Q6T423 547 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 C20orf204Q6ZNR8 217 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 DPPA2Q7Z7J5 298 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 TMEM179BQ7Z7N9 219 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 JAZF1Q86VZ6 243 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 SKA3Q8IX90 412 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 DUS3LQ96G46 650 aaKnown RBP11.84□□□□□ -0.51
SHMT2-228ENST00000557302 FEVQ99581 238 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 KCNS3Q9BQ31 491 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 DENND2DQ9H6A0 471 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-228ENST00000557302 ARMC1Q9NVT9 282 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 B3GNT2Q9NY97 397 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 IL20Q9NYY1 176 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 POU2F3Q9UKI9 436 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 PLEKHA6Q9Y2H5 1048 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 UGT2A1Q9Y4X1 527 aa11.84□□□□□ -0.51
SHMT2-228ENST00000557302 SHISA9B4DS77 424 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 IDH3BO43837 385 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 MGRN1O60291 552 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 IGLV1-44P01699 117 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 CECR9P0C854 216 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 FCGR1AP12314 374 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 FASP25445 335 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 NOS3P29474 1203 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 CDAP32320 146 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 GIPRP48546 466 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 ACTR3P61158 418 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 PIGFQ07326 219 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 COX10Q12887 443 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 ATP6AP1Q15904 470 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 SLC36A2Q495M3 483 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 ZNF672Q499Z4 452 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-228ENST00000557302 CD300LDQ6UXZ3 194 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms