RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZNF347Q96SE7 839 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 NDUFAF4Q9P032 175 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 SLC7A8Q9UHI5 535 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 TMEM5Q9Y2B1 443 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 UGT2A1Q9Y4X1 527 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 ABCA2Q9BZC7 2435 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 TMEM129A0AVI4 362 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 A6NIZ1 184 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 TLX2O43763 284 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 PTHP01270 115 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 SAGP10523 405 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 RHCEP18577 417 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 RAP1BP61224 184 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 RPL27P61353 136 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 RAP1AP62834 184 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 PIGFQ07326 219 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 LAPTM4AQ15012 233 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 SAMD4BQ5PRF9 694 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 GLYATQ6IB77 296 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 ZNF730Q6ZMV8 503 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 FOXL2NBQ6ZUU3 175 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 Q71RC1 249 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 OAFQ86UD1 273 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 OR4K5Q8NGD3 323 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 FGFBP3Q8TAT2 258 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 SLC7A13Q8TCU3 470 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 HDAC2Q92769 488 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 MRPL24Q96A35 216 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 SIAEQ9HAT2 523 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 NDE1Q9NXR1 346 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 RHCGQ9UBD6 479 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 CD300AQ9UGN4 299 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 TAGLN3Q9UI15 199 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 MAGEL2Q9UJ55 1249 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 CMAHPQ9Y471 501 aa13.85□□□□□ -0.19
CCDC88C-209ENST00000554872 SLC22A23A1A5C7 686 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 EFCAB9A8MZ26 197 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 VWC2LB2RUY7 222 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 hCG_2039718K7EN88 272 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 AHCYL1O43865 530 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 CD5LO43866 347 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 GMNNO75496 209 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 SEMG1P04279 462 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 H1F0P07305 194 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 MMP7P09237 267 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 NCK1P16333 377 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 YAP1P46937 504 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 IQCCQ4KMZ1 466 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 THEM4Q5T1C6 240 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 TMEM53Q6P2H8 277 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 VHLLQ6RSH7 139 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 CDK20Q8IZL9 346 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 SYT14Q8NB59 555 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 NEU4Q8WWR8 484 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 NABP1Q96AH0 204 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 GPX7Q96SL4 187 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 FUZQ9BT04 418 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 NDEL1Q9GZM8 345 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 RAB1BQ9H0U4 201 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 ADA2Q9NZK5 511 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 EGFL7Q9UHF1 273 aa13.84□□□□□ -0.19
CCDC88C-209ENST00000554872 ABCA1O95477 2261 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 LOC390937A0A1W2PQ73 354 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 CDC42EP2O14613 210 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 ERCC1P07992 297 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 IGFBP1P08833 259 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 ITGA2P17301 1181 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 PCSK6P29122 969 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 LIMS1P48059 325 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 PDLIM4P50479 330 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 VLDLRP98155 873 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 PPP2R2BQ00005 443 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 RAB39AQ14964 217 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 KRT80Q6KB66 452 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 SLC25A47Q6Q0C1 308 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 SLC16A14Q7RTX9 510 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 SLC30A7Q8NEW0 376 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 OR13C2Q8NGS9 318 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 TNFRSF13CQ96RJ3 184 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 SH3GL3Q99963 347 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 WACQ9BTA9 647 aa13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 FAM32AQ9Y421 112 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-209ENST00000554872 TRAV27A0A087WT01 109 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 SYNGR3O43761 229 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 SLC2A10O95528 541 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 CD14P08571 375 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 MNAT1P51948 309 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 GYS2P54840 703 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 CTXN1P60606 82 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 GALK2Q01415 458 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 CD47Q08722 323 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 KRT72Q14CN4 511 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 MSMPQ1L6U9 139 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 ZBED5Q49AG3 693 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 FAM27BQ5VT28 67 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 C16orf89Q6UX73 402 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 RRM2BQ7LG56 351 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 FAM122BQ7Z309 247 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 SVOPLQ8N434 492 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 FAM86B1Q8N7N1 296 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms