RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 DNM1P34Q6PK57 102 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 TRILQ7L0X0 811 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 PRSS48Q7RTY5 328 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 GPAT4Q86UL3 456 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 PHC2Q8IXK0 858 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 NPEPL1Q8NDH3 523 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 OR2T4Q8NH00 348 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 ZNF519Q8TB69 540 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 GGHQ92820 318 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 ADAD1Q96M93 576 aaKnown RBP12.85□□□□□ -0.35
SHMT2-208ENST00000553868 NMNAT3Q96T66 252 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 AMBNQ9NP70 447 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 BATF3Q9NR55 127 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 MRPS18AQ9NVS2 196 aaKnown RBP12.85□□□□□ -0.35
SHMT2-208ENST00000553868 FKBP14Q9NWM8 211 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 COQ3Q9NZJ6 369 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 PCDHGB1Q9Y5G3 927 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 FAM183AA6NL82 134 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 TRIM64CA6NLI5 447 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 INAFM1C9JVW0 142 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 NPIPA2E9PIF3 369 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 NPIPA3F8WFD2 350 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 FADS2O95864 444 aaKnown RBP12.84□□□□□ -0.35
SHMT2-208ENST00000553868 CDK1P06493 297 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 CPN1P15169 458 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 IFNGR1P15260 489 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 ABOP16442 354 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 ATP6V1E1P36543 226 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 SLC15A1P46059 708 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 CENPAP49450 140 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 P2RY4P51582 365 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 BLVRAP53004 296 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 SLC16A1P53985 500 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 NR1H2P55055 460 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 CLDN15P56746 228 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 CLDN18P56856 261 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 MVKQ03426 396 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 PON3Q15166 354 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 KLHL12Q53G59 568 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 MESTQ5EB52 335 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 RNFT1Q5M7Z0 435 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 VASNQ6EMK4 673 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 KDM8Q8N371 416 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 CYB561A3Q8NBI2 242 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 FNDC8Q8TC99 324 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 ASB10Q8WXI3 467 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 PTP4A1Q93096 173 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 RNFT2Q96EX2 444 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 TMEM80Q96HE8 168 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 SRXN1Q9BYN0 137 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 OR51V1Q9H2C8 321 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 CHCHD3Q9NX63 227 aaKnown RBP12.84□□□□□ -0.35
SHMT2-208ENST00000553868 B3GAT1Q9P2W7 334 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 ERVK-18Q9QC07 812 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 MCTS1Q9ULC4 181 aaKnown RBP12.84□□□□□ -0.35
SHMT2-208ENST00000553868 MOKQ9UQ07 419 aa12.84□□□□□ -0.35
SHMT2-208ENST00000553868 HIVEP2P31629 2446 aa12.83□□□□□ -0.35
SHMT2-208ENST00000553868 A0A1B0GVC2 190 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 PRSS37A4D1T9 235 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 ZNF726A6NNF4 738 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 CENPBD1B2RD01 187 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 E9PLN8 166 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 AQP7O14520 342 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 WIPF1O43516 503 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 RAB36O95755 333 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 HOXD4P09016 255 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-208ENST00000553868 CRABP1P29762 137 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 CDKN2AP42771 156 aaKnown RBP12.83□□□□□ -0.36
SHMT2-208ENST00000553868 RPL5P46777 297 aaKnown RBP12.83□□□□□ -0.36
SHMT2-208ENST00000553868 SUCLG1P53597 346 aaKnown RBP12.83□□□□□ -0.36
SHMT2-208ENST00000553868 SRYQ05066 204 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 ST3GAL4Q11206 333 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 BCDIN3DQ7Z5W3 292 aaKnown RBP12.83□□□□□ -0.36
SHMT2-208ENST00000553868 KRTAP1-3Q8IUG1 177 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 PM20D2Q8IYS1 436 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 BBS1Q8NFJ9 593 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 OR6X1Q8NH79 312 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 FCGR1BQ92637 280 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 SARAFQ96BY9 339 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 DDOQ99489 341 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 VKORC1Q9BQB6 163 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 ALG12Q9BV10 488 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 NMNAT2Q9BZQ4 307 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 MED20Q9H944 212 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 PAK1IP1Q9NWT1 392 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-208ENST00000553868 HAO2Q9NYQ3 351 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 VSX1Q9NZR4 365 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-208ENST00000553868 FKBP7Q9Y680 259 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 ZANQ9Y493 2812 aa12.83□□□□□ -0.36
SHMT2-208ENST00000553868 OR6C68A6NDL8 312 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 RNF212BA8MTL3 300 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 SMAD9O15198 467 aaKnown RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 TRAF3IP2O43734 574 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 IGHG1P01857 330 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 HLA-DOBP13765 273 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 SPI1P17947 270 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 MYL12AP19105 171 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 SLC2A5P22732 501 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 DCKP27707 260 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 HOXC12P31275 282 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms