RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 MTHFD2LQ9H903 347 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 HINT3Q9NQE9 182 aaKnown RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 MED29Q9NX70 200 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 NKIRAS2Q9NYR9 191 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF69Q9UC07 566 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 BTNL2Q9UIR0 455 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF443Q9Y2A4 671 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 NOX1Q9Y5S8 564 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 DNAH9Q9NYC9 4486 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 COL7A1Q02388 2944 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 IGHV1-69-2A0A0G2JMI3 117 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 SMIM23A6NLE4 172 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 CLDN25C9JDP6 229 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 E9PBE3 544 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 CLDN34H7C241 214 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 AIM2O14862 343 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 AKAP8O43823 692 aaKnown RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 UBL3O95164 117 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 RAB36O95755 333 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 NR2F1P10589 423 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 MDKP21741 143 aaPredicted RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 GRPRP30550 384 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 GCH1P30793 250 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 AQP5P55064 265 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 KLF3P57682 345 aaPredicted RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 ERVS71-1P61550 626 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 COPZ1P61923 177 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 RAB1AP62820 205 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 LCN2P80188 198 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 GALK2Q01415 458 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 RAB39AQ14964 217 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 PCGF3Q3KNV8 242 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 GLIPR1L2Q4G1C9 344 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 TMEM255AQ5JRV8 349 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 FAM69AQ5T7M9 428 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 LCE5AQ5TCM9 118 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 CARD17Q5XLA6 110 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 ATG16L1Q676U5 607 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 HIST2H2BDQ6DRA6 164 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 RGS7BPQ6MZT1 257 aaPredicted RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 USP51Q70EK9 711 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 PEX5LQ8IYB4 626 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 BCL6BQ8N143 479 aaPredicted RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 OR52P1PQ8NH57 321 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 PNPT1Q8TCS8 783 aaKnown RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 POP5Q969H6 163 aaKnown RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 TAAR8Q969N4 342 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 SLC41A3Q96GZ6 507 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 LRR1Q96L50 414 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 TEX37Q96LM6 180 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 FOXB1Q99853 325 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 EMC6Q9BV81 110 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 RSPO3Q9BXY4 272 aaPredicted RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 DPY30Q9C005 99 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 PPCSQ9HAB8 311 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 TCF7L2Q9NQB0 619 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 SLC6A13Q9NSD5 602 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 TAAR3PQ9P1P4 343 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 LEF1Q9UJU2 399 aaPredicted RBP6.15□□□□□ -1.42
ATXN3-219ENST00000553488 FBXL3Q9UKT7 428 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 MMP24Q9Y5R2 645 aa6.15□□□□□ -1.42
ATXN3-219ENST00000553488 CCDC154A6NI56 674 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 MS4A18H0YCH9 400 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 AMY2AP04746 511 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SERPINA5P05154 406 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 PATE4P0C8F1 98 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 NCF2P19878 526 aaPredicted RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 AMY2BP19961 511 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 MAKP20794 623 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 HTR2AP28223 471 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 GTF2E2P29084 291 aaKnown RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 IL12AP29459 219 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 ANXA11P50995 505 aaKnown RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 CLNS1AP54105 237 aaKnown RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 HOXC5Q00444 222 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SRSF4Q08170 494 aaKnown RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 HNRNPA0Q13151 305 aaKnown RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 C1DQ13901 141 aaKnown RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SLC9A3R2Q15599 337 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 MS4A18Q3C1V0 323 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 ARMCX4Q5H9R4 360 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 LEG1Q6P5S2 330 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 TMEM154Q6P9G4 183 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 C5orf46Q6UWT4 87 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 RBMS3Q6XE24 437 aaKnown RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 H1FNTQ75WM6 255 aaPredicted RBP6.14□□□□□ -1.43
ATXN3-219ENST00000553488 RHOUQ7L0Q8 258 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 COMTD1Q86VU5 262 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 UEVLDQ8IX04 471 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SKA3Q8IX90 412 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 LRRC34Q8IZ02 419 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 VPS37AQ8NEZ2 397 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 MGARPQ8TDB4 240 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SNX33Q8WV41 574 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SLC38A4Q969I6 547 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SLC35B4Q969S0 331 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 TXNDC15Q96J42 360 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 PPP1R36Q96LQ0 422 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 GAL3ST1Q99999 423 aa6.14□□□□□ -1.43
ATXN3-219ENST00000553488 SSBP3Q9BWW4 388 aaPredicted RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms