RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.96□□□□□ -0.66
LINC00643-202ENST00000553426 GMNCA6NCL1 334 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 B4DSR2 109 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 MRASO14807 208 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 OR7A10O76100 309 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 SNAP29O95721 258 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 MT-ND5P03915 603 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 F13BP05160 661 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 IGFBP1P08833 259 aaPredicted RBP10.95□□□□□ -0.66
LINC00643-202ENST00000553426 FAM157BP0CG42 384 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 DRD4P21917 467 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 APLNRP35414 380 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 GUCA1AP43080 201 aaPredicted RBP10.95□□□□□ -0.66
LINC00643-202ENST00000553426 GZMMP51124 257 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 SEC24CP53992 1094 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 CDH15P55291 814 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 KLF3P57682 345 aaPredicted RBP10.95□□□□□ -0.66
LINC00643-202ENST00000553426 MRPS11P82912 194 aaKnown RBP10.95□□□□□ -0.66
LINC00643-202ENST00000553426 HSF2Q03933 536 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 CCNIQ14094 377 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 TRIP10Q15642 601 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 PCGF3Q3KNV8 242 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 UNQ6126/PRO20091Q6UXV3 157 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 LRP11Q86VZ4 500 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 CALHM3Q86XJ0 350 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 ZNF584Q8IVC4 421 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 SYT14Q8NB59 555 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 RBM15BQ8NDT2 890 aaKnown RBP10.95□□□□□ -0.66
LINC00643-202ENST00000553426 NOXO1Q8NFA2 376 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 FGFBP3Q8TAT2 258 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 ZNF519Q8TB69 540 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 SYNPRQ8TBG9 265 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 TMEM255BQ8WV15 326 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 LZICQ8WZA0 190 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 ZNF347Q96SE7 839 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 SOX7Q9BT81 388 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 ZNF416Q9BWM5 594 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 CCNB1IP1Q9NPC3 277 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 TAAR3PQ9P1P4 343 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 SVEP1Q4LDE5 3571 aa10.95□□□□□ -0.66
LINC00643-202ENST00000553426 HTR3EA5X5Y0 456 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 PPIHO43447 177 aaKnown RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 HPXP02790 462 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 SAGP10523 405 aaPredicted RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 NAT2P11245 290 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 CCL2P13500 99 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 ACADSP16219 412 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 IL2RGP31785 369 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 AQP2P41181 271 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 OR1E2P47887 323 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 DVL1P1P54792 670 aaPredicted RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 UGT2B15P54855 530 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 MYBPC1Q00872 1141 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 TEKQ02763 1124 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 ST3GAL3Q11203 375 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 SCGB2A2Q13296 93 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 PIN1Q13526 163 aaPredicted RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 MAD2L1BPQ15013 274 aaPredicted RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 TAF11Q15544 211 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 HIST3H3Q16695 136 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 MSMPQ1L6U9 139 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 KRTAP24-1Q3LI83 254 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 LRRC23Q53EV4 343 aaPredicted RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 ELFN2Q5R3F8 820 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 GLCCI1Q86VQ1 547 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 TSPYL5Q86VY4 417 aaPredicted RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 NKAIN4Q8IVV8 208 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 LRRC18Q8N456 261 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 RFLNBQ8N5W9 214 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 ICA1LQ8NDH6 482 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 PFN4Q8NHR9 129 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 C10orf82Q8WW14 230 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 ASB10Q8WXI3 467 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 TPD52L3Q96J77 140 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 MRPL13Q9BYD1 178 aaKnown RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 OR51B6Q9H340 312 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 SIAEQ9HAT2 523 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 SMURF2Q9HAU4 748 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 HINT3Q9NQE9 182 aaKnown RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 EIF3KQ9UBQ5 218 aaKnown RBP10.94□□□□□ -0.66
LINC00643-202ENST00000553426 AP3M1Q9Y2T2 418 aa10.94□□□□□ -0.66
LINC00643-202ENST00000553426 NBEAL1Q6ZS30 2694 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 LOC100653049A0A140TA62 436 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 TPD52L2O43399 206 aaKnown RBP10.93□□□□□ -0.66
LINC00643-202ENST00000553426 SHOX2O60902 331 aaPredicted RBP10.93□□□□□ -0.66
LINC00643-202ENST00000553426 TRMUO75648 421 aaKnown RBP10.93□□□□□ -0.66
LINC00643-202ENST00000553426 KRT34O76011 436 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 TFP02787 698 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 H2AFXP16104 143 aaPredicted RBP10.93□□□□□ -0.66
LINC00643-202ENST00000553426 TNFRSF1BP20333 461 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 CCNOP22674 350 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 COL8A2P25067 703 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 CRYBA2P53672 197 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 UCP2P55851 309 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 RUNX1T1Q06455 604 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 CD47Q08722 323 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 KLF10Q13118 480 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 ALKBH6Q3KRA9 238 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 CYBRD1Q53TN4 286 aa10.93□□□□□ -0.66
LINC00643-202ENST00000553426 ALG10Q5BKT4 473 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms