RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 NOX3Q9HBY0 568 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF224Q9NZL3 707 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 DNAJB9Q9UBS3 223 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 PLEKHA6Q9Y2H5 1048 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 UGT2A1Q9Y4X1 527 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 CDH10Q9Y6N8 788 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 PRRC2AP48634 2157 aaKnown RBP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 IGHV1-18A0A0C4DH31 117 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 SHISA9B4DS77 424 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 XKRYO14609 159 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 IMPA2O14732 288 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 E2F6O75461 281 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 TXNDC12O95881 172 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 IGFBP1P08833 259 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 CELA3BP08861 270 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 PATE4P0C8F1 98 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 CD79AP11912 226 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 CDAP32320 146 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF84P51523 738 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 RPS6KA3P51812 740 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 PIGFQ07326 219 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 GK3PQ14409 553 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 CLEC12AQ5QGZ9 265 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 THEM4Q5T1C6 240 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 GPR139Q6DWJ6 353 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 PAMR1Q6UXH9 720 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 PTCHD4Q6ZW05 846 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 MDP1Q86V88 176 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 MYPOPQ86VE0 399 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 SKA3Q8IX90 412 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 SLC22A24Q8N4F4 322 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 OR8D4Q8NGM9 314 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 LILRB1Q8NHL6 650 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 FGFBP3Q8TAT2 258 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 AKAP1Q92667 903 aaKnown RBP eCLIP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 ERMAPQ96PL5 475 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 SLC38A2Q96QD8 506 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 FEVQ99581 238 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 SH3GL3Q99963 347 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 NIPSNAP1Q9BPW8 284 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 IFT27Q9BW83 186 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 SMURF2Q9HAU4 748 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 NTN4Q9HB63 628 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 B3GNT2Q9NY97 397 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 PDP1Q9P0J1 537 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 CRNNQ9UBG3 495 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-226ENST00000553011 ST6GALNAC2Q9UJ37 374 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 MGAT4BQ9UQ53 548 aa12.3□□□□□ -0.44
PTCH1-226ENST00000553011 ARFGEF3Q5TH69 2177 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 SLC22A23A1A5C7 686 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 PRSS37A4D1T9 235 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 HS3ST1O14792 307 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 DEAF1O75398 565 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-226ENST00000553011 SOX14O95416 240 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 TP53P04637 393 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-226ENST00000553011 CECR9P0C854 216 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 OR8G3PP0DMU2 310 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 NR2C1P13056 603 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 APEHP13798 732 aaKnown RBP12.29□□□□□ -0.44
PTCH1-226ENST00000553011 CBR1P16152 277 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 PRKACGP22612 351 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 PTAFRP25105 342 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 CDKN2AP42771 156 aaKnown RBP12.29□□□□□ -0.44
PTCH1-226ENST00000553011 IDH3GP51553 393 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-226ENST00000553011 NPRL3Q12980 569 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 RASSF6Q6ZTQ3 369 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 CCDC36Q8IYA8 594 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 FNDC8Q8TC99 324 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 DUS3LQ96G46 650 aaKnown RBP12.29□□□□□ -0.44
PTCH1-226ENST00000553011 SYT4Q9H2B2 425 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 ARMC1Q9NVT9 282 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 AP4S1Q9Y587 144 aa12.29□□□□□ -0.44
PTCH1-226ENST00000553011 ARRDC5A6NEK1 342 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ATP6V1G2-DDX39BF2Z307 99 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ARPC3O15145 178 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 FARS2O95363 451 aaKnown RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 IGKV3-15P01624 115 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 IGLV1-44P01699 117 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 RAF1P04049 648 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 HIST1H1CP16403 213 aaKnown RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 CTLA4P16410 223 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 GSTM3P21266 225 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 GIPRP48546 466 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 CDH11P55287 796 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 MRPS34P82930 218 aaKnown RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 KPNB1Q14974 876 aaKnown RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ATP6AP1Q15904 470 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ETFDHQ16134 617 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 SGCAQ16586 387 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 GSG1Q2KHT4 349 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF672Q499Z4 452 aaPredicted RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 SLC35F1Q5T1Q4 408 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 SLC22A25Q6T423 547 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ADCK1Q86TW2 530 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 LRRC18Q8N456 261 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 OR52L1Q8NGH7 329 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 OR4K13Q8NH42 304 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 NANOS1Q8WY41 292 aaKnown RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 NABP1Q96AH0 204 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF75AQ96N20 296 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms