RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZNF805Q5CZA5 627 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF542PQ5EBM4 170 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 FAM69AQ5T7M9 428 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 FBXO42Q6P3S6 717 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 LRRC56Q8IYG6 542 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SCARB1Q8WTV0 552 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 C15orf40Q8WUR7 153 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TCTEX1D2Q8WW35 142 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 NRTNQ99748 197 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 C1QTNF3Q9BXJ4 246 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 MTHFD2LQ9H903 347 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF304Q9HCX3 659 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 STARD5Q9NSY2 213 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SCML1Q9UN30 329 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 DHDHQ9UQ10 334 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 PUS1Q9Y606 427 aaKnown RBP eCLIP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TECTAO75443 2155 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 UNC13CQ8NB66 2214 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF705GA8MUZ8 300 aaPredicted RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 NPC1O15118 1278 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 HCRTR2O43614 444 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 RNH1P13489 461 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF20P17024 532 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 HMGA1P17096 107 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 CD22P20273 847 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 MRPL19P49406 292 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 SELENOPP49908 381 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 EIF5AP63241 154 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 DEFA6Q01524 100 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TPBGQ13641 420 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 KCNAB1Q14722 419 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TRAM1Q15629 374 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 RAB11BQ15907 218 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF674Q2M3X9 581 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 LGALSLQ3ZCW2 172 aaPredicted RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 ABCA11PQ4W5N1 156 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR10K2Q6IF99 312 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 FAM111BQ6SJ93 734 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 RAB11FIP2Q7L804 512 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 DGLUCYQ7Z3D6 616 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CMTM4Q8IZR5 234 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR6V1Q8N148 313 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 LRRC25Q8N386 305 aaPredicted RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 C9orf62Q8N4C0 152 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR11H7Q8NGC8 314 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR5T2Q8NGG2 359 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR2AJ1Q8NGZ0 328 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 PFN4Q8NHR9 129 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SLAMF9Q96A28 289 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 KIAA1143Q96AT1 154 aaPredicted RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 PELOQ9BRX2 385 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 MARVELD1Q9BSK0 173 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TCEAL2Q9H3H9 227 aaPredicted RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 TM7SF3Q9NS93 570 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TRAPPC4Q9Y296 219 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 COLEC10Q9Y6Z7 277 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM129A0AVI4 362 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 C1orf226A1L170 272 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CLDN4O14493 209 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 PLPP1O14494 284 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 UGDHO60701 494 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 MED6O75586 246 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR8U9P0C7N5 309 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ZDHHC11BP0C7U3 371 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 LIMS3P0CW19 117 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 LIMS4P0CW20 117 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 S1PR1P21453 382 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SLC2A5P22732 501 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 RBMXP38159 391 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 CAMLGP49069 296 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CAPZA1P52907 286 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ACTA2P62736 377 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ACTG2P63267 376 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SHC2P98077 582 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 IKZF1Q13422 519 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR1Q1Q15612 314 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 RPE65Q16518 533 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SPIN3Q5JUX0 258 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 PDSS1Q5T2R2 415 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 DPY19L4Q7Z388 723 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 GLB1L2Q8IW92 636 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 RNF152Q8N8N0 203 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 IL17RCQ8NAC3 791 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR4D9Q8NGE8 314 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR1J4Q8NGS1 313 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR13C9Q8NGT0 318 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR10Z1Q8NGY1 313 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR2T4Q8NH00 348 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TOMM40LQ969M1 308 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TSSK2Q96PF2 358 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TEAD3Q99594 435 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ADAT1Q9BUB4 502 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 ST6GALNAC5Q9BVH7 336 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 C1QTNF7Q9BXJ2 289 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SLC2A4RGQ9NR83 387 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CD207Q9UJ71 328 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ATG4BQ9Y4P1 393 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ASXL3Q9C0F0 2248 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 BSNQ9UPA5 3926 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms