RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CNOT1A5YKK6 2376 aaKnown RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 ZFHX2Q9C0A1 2572 aaPredicted RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 OR14I1A6ND48 311 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 LIPT2A6NK58 231 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 H3BUI4 141 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 J3QRE1 110 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 M0R3G1 203 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 NDUFS8O00217 210 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 TLX3O43711 291 aaPredicted RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 PMS2P2O95744 297 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 CH25HO95992 272 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 CLPTM1O96005 669 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 P04436 131 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 SAGP10523 405 aaPredicted RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 FUT1P19526 365 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 ITPKBP27987 946 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 RPL5P46777 297 aaKnown RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 H3F3AP84243 136 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 INPP5JQ15735 1006 aaPredicted RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 LCE5AQ5TCM9 118 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 PRAMEF20Q5VT98 475 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 AGAP7PQ5VUJ5 663 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 TMEM236Q5W0B7 351 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 XAF1Q6GPH4 301 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 PTCHD4Q6ZW05 846 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 VASH2Q86V25 355 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 EXD3Q8N9H8 876 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 OR5M3Q8NGP4 307 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 OR5J2Q8NH18 312 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 TAAR8Q969N4 342 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 MIB2Q96AX9 1013 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 ADGRG7Q96K78 797 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 SAMD8Q96LT4 415 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 AGAP4Q96P64 663 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 SIGLEC12Q96PQ1 595 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 UTP23Q9BRU9 249 aaKnown RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 TSSK6Q9BXA6 273 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 TEX12Q9BXU0 123 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 ENKD1Q9H0I2 346 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 RBM38Q9H0Z9 239 aaKnown RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 TPK1Q9H3S4 243 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 DLL4Q9NR61 685 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 PLSCR4Q9NRQ2 329 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 TBCCD1Q9NVR7 557 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 IMPAD1Q9NX62 359 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 ALKBH4Q9NXW9 302 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 TAS2R5Q9NYW4 299 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 BOKQ9UMX3 212 aaPredicted RBP7.54□□□□□ -1.2
VPS29-203ENST00000546588 B3GALT5Q9Y2C3 310 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 ARHGAP21Q5T5U3 1957 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 TRAV27A0A087WT01 109 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 A0A0G2JMM0 328 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 A0A1B0GWJ7 208 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 A0A1W2PPB8 328 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 A0A1W2PRS3 328 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 IRGMA1A4Y4 181 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 EFCAB10A6NFE3 127 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 FAM171A2A8MVW0 826 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 KIR3DP1A8MWS1 328 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 MCIDASD6RGH6 385 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 ZNF701M0R085 212 aaPredicted RBP7.53□□□□□ -1.2
VPS29-203ENST00000546588 KPNA4O00629 521 aaPredicted RBP7.53□□□□□ -1.2
VPS29-203ENST00000546588 NKX2-8O15522 239 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 SEC14L5O43304 696 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 CIDEAO60543 219 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 CLN5O75503 358 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 SLC25A12O75746 678 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 AHSA1O95433 338 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 NUDT14O95848 222 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 TSPAN15O95858 294 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 WDPCPO95876 746 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 CDK1P06493 297 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 SP1P08047 785 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 CD14P08571 375 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 DBTP11182 482 aaKnown RBP7.53□□□□□ -1.2
VPS29-203ENST00000546588 ITGA3P26006 1051 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 CFPP27918 469 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 TTKP33981 857 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 TNFSF10P50591 281 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 SLC25A1P53007 311 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 RAB1AP62820 205 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 ZNF91Q05481 1191 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 RPL18Q07020 188 aaKnown RBP7.53□□□□□ -1.2
VPS29-203ENST00000546588 LGALS3BPQ08380 585 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 RAB40BQ12829 278 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 SRSF6Q13247 344 aaKnown RBP7.53□□□□□ -1.2
VPS29-203ENST00000546588 OR1C1Q15619 314 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 SMN1Q16637 294 aaKnown RBP7.53□□□□□ -1.2
VPS29-203ENST00000546588 ATP1A1-AS1Q5TC04 95 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 UBE2UQ5VVX9 321 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 NIPAL3Q6P499 406 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 CLEC2AQ6UVW9 174 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 GID4Q8IVV7 300 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 IQCF1Q8N6M8 205 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 LRRC17Q8N6Y2 441 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 STPG3Q8N7X2 389 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 TCEANCQ8N8B7 351 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 OR2M7Q8NG81 312 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 OR4K17Q8NGC6 315 aa7.53□□□□□ -1.2
VPS29-203ENST00000546588 C9orf43Q8TAL5 461 aaPredicted RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms