RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ZNF16P17020 682 aaPredicted RBP14.28□□□□□ -0.12
CUX1-211ENST00000546411 SERPINA2P20848 420 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 TSEN54Q7Z6J9 526 aaKnown RBP14.28□□□□□ -0.12
CUX1-211ENST00000546411 OR51S1Q8NGJ8 323 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 OR5H2Q8NGV7 314 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 PTP4A1Q93096 173 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 ZNF578Q96N58 590 aaPredicted RBP14.28□□□□□ -0.12
CUX1-211ENST00000546411 DOCK4Q8N1I0 1966 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 IFITM5A6NNB3 132 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 PRAF2O60831 178 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 DUSP3P51452 185 aaPredicted RBP14.27□□□□□ -0.12
CUX1-211ENST00000546411 ABI3BPQ7Z7G0 1075 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 ARIH2OSQ8N7S6 290 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 CCDC86Q9H6F5 360 aaKnown RBP14.27□□□□□ -0.12
CUX1-211ENST00000546411 ISYNA1Q9NPH2 558 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 RPL27P61353 136 aaKnown RBP14.27□□□□□ -0.12
CUX1-211ENST00000546411 HERV-K104P61576 105 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 MRPS10P82664 201 aaKnown RBP14.27□□□□□ -0.12
CUX1-211ENST00000546411 PSG6Q00889 435 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 MOGAT1Q96PD6 335 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 GAREM1Q9H706 876 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 MCCC2Q9HCC0 563 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 EMC7Q9NPA0 242 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 DNAJB12Q9NXW2 375 aaKnown RBP14.27□□□□□ -0.12
CUX1-211ENST00000546411 COPS3Q9UNS2 423 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 NEUROG3Q9Y4Z2 214 aa14.27□□□□□ -0.12
CUX1-211ENST00000546411 BLACEA4D250 179 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 FGF9P31371 208 aaPredicted RBP14.27□□□□□ -0.13
CUX1-211ENST00000546411 DCTDP32321 178 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 FAM189A2Q15884 450 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 ARTNQ5T4W7 220 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 C3P1Q6ZMU1 363 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 C12orf45Q8N5I9 185 aaPredicted RBP14.27□□□□□ -0.13
CUX1-211ENST00000546411 OR7G1Q8NGA0 311 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 ASB17Q8WXJ9 295 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 C3orf49Q96BT1 292 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 NUDT9Q9BW91 350 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 PHF7Q9BWX1 381 aaPredicted RBP14.27□□□□□ -0.13
CUX1-211ENST00000546411 C1orf198Q9H425 327 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 SLC39A1Q9NY26 324 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 FLRT3Q9NZU0 649 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 SIP14410 1827 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 A0A0G2JMZ2 1700 aa14.27□□□□□ -0.13
CUX1-211ENST00000546411 A0A087WUJ7 227 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 CCR9P51686 369 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 RSU1Q15404 277 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 SLC36A2Q495M3 483 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 COMTD1Q86VU5 262 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 C7orf50Q9BRJ6 194 aaKnown RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 NAA11Q9BSU3 229 aaPredicted RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 NPAP1Q9NZP6 1156 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 NSG1A0A0A6YYJ2 146 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 SLC33A1O00400 549 aaPredicted RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 ZFPL1O95159 310 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 GLP1RP43220 463 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 TNK1Q13470 666 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 NR0B2Q15466 257 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 C1QL3Q5VWW1 255 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 ZNF770Q6IQ21 691 aaPredicted RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 GRINAQ7Z429 371 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 P4HA3Q7Z4N8 544 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 PDZD9Q8IXQ8 264 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 GABRG3Q99928 467 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 MRI1Q9BV20 369 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 NUP50Q9UKX7 468 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 SCN5AQ14524 2016 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 SERPINA5P05154 406 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 CCR5P51681 352 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 RPS15P62841 145 aaKnown RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 FUT5Q11128 374 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 RBMS2Q15434 407 aaKnown RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 SLC35D3Q5M8T2 416 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 CD300LDQ6UXZ3 194 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 TDHQ8IZJ6 230 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 SP7Q8TDD2 431 aaPredicted RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 ULBP2Q9BZM5 246 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 ZNF700Q9H0M5 742 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 APMAPQ9HDC9 416 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 TAS2R4Q9NYW5 299 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 DTX4Q9Y2E6 619 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 ALOX12BO75342 701 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 ZNF35P13682 527 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 HOXC12P31275 282 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 SLC9A3R2Q15599 337 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 STEAP1BQ6NZ63 245 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 ZBTB8AQ96BR9 441 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 ABHD1Q96SE0 405 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 UBE2ZQ9H832 354 aaPredicted RBP14.26□□□□□ -0.13
CUX1-211ENST00000546411 SLCO1C1Q9NYB5 712 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 CHRNA9Q9UGM1 479 aa14.26□□□□□ -0.13
CUX1-211ENST00000546411 TMEM82A0PJX8 343 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 DVL2O14641 736 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 GABRB1P18505 474 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 Q6ZTK2 550 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 ZNF546Q86UE3 836 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 ZNF565Q8N9K5 539 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 PISDQ9UG56 409 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 CES1P1Q9UKY3 287 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 TMEM235A6NFC5 223 aa14.25□□□□□ -0.13
CUX1-211ENST00000546411 C5orf67F2Z3F1 127 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms