RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CEACAM16Q2WEN9 425 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 PGGHGQ32M88 737 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 CLEC12AQ5QGZ9 265 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 ACBD4Q8NC06 268 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 HDAC2Q92769 488 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 FOXB1Q99853 325 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 ACTR6Q9GZN1 396 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 CMC2Q9NRP2 79 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 FKBP7Q9Y680 259 aa15.41■□□□□ 0.06
CLSTN3-210ENST00000540931 CACNA1CQ13936 2221 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 SLC22A23A1A5C7 686 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 OR5H1A6NKK0 313 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 SOCS2O14508 198 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 KHDRBS3O75525 346 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 SOX14O95416 240 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 ITGA5P08648 1049 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 OR8G3PP0DMU2 310 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 EPXP11678 715 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 COX6B1P14854 86 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 MRPS34P82930 218 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 SLC34A1Q06495 639 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 NPRL3Q12980 569 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 TRIP10Q15642 601 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 GABRA6Q16445 453 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 MESTQ5EB52 335 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 CBR4Q8N4T8 237 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 FAM169BQ8N8A8 192 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 SYT14Q8NB59 555 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 OR1K1Q8NGR3 316 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 OR2T4Q8NH00 348 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 GABARAPL3Q9BY60 117 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 RNPEPL1Q9HAU8 725 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 IL20RAQ9UHF4 553 aa15.4■□□□□ 0.06
CLSTN3-210ENST00000540931 ARPC4-TTLL3A0A0A6YYG9 625 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 SH3D21A4FU49 640 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 EI24O14681 340 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 CASQ2O14958 399 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 LYZL6O75951 148 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 TP53P04637 393 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 HIST1H1CP16403 213 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 PCBD1P61457 104 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 GLO1Q04760 184 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 GINS1Q14691 196 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 PTGES3Q15185 160 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 CDSNQ15517 529 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 C3orf36Q3SXR2 165 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 SP5Q6BEB4 398 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 LEG1Q6P5S2 330 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 LRFN4Q6PJG9 635 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 MEX3BQ6ZN04 569 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 PLA2G12AQ9BZM1 189 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 RACGAP1Q9H0H5 632 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 FN3KQ9H479 309 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 SIAEQ9HAT2 523 aa15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 NPDC1Q9NQX5 325 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-210ENST00000540931 HCFC1P51610 2035 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 RAD51DO75771 328 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 UBL3O95164 117 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 PTDSS1P48651 473 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 CDC42P60953 191 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 ARF1P84077 181 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 LGALS3BPQ08380 585 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC36A2Q495M3 483 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC25A47Q6Q0C1 308 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 ZNF813Q6ZN06 617 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 GLB1L2Q8IW92 636 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 OR52E2Q8NGJ4 325 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 OR4K13Q8NH42 304 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 TRUB1Q8WWH5 349 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 BCL2L2Q92843 193 aaPredicted RBP15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 S100PBPQ96BU1 408 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 RASD2Q96D21 266 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 NMD3Q96D46 503 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 NELFAQ9H3P2 528 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC17A5Q9NRA2 495 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 TMEM38BQ9NVV0 291 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 TMEFF2Q9UIK5 374 aaPredicted RBP15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 MOKQ9UQ07 419 aa15.38■□□□□ 0.05
CLSTN3-210ENST00000540931 MPZL2O60487 215 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 PTHP01270 115 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 EDNRAP25101 427 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC25A1P53007 311 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 NR1H2P55055 460 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 RUNX1T1Q06455 604 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 DAZAP2Q15038 168 aaPredicted RBP15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 PPA1Q15181 289 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 TBRG1Q3YBR2 411 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 SYT9Q86SS6 491 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 ZBTB46Q86UZ6 589 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 IL17RDQ8NFM7 739 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 OR8D4Q8NGM9 314 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 NMNAT3Q96T66 252 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 SYT4Q9H2B2 425 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 RASSF4Q9H2L5 321 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 C1orf198Q9H425 327 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 KCNG2Q9UJ96 466 aa15.37■□□□□ 0.05
CLSTN3-210ENST00000540931 FREM1Q5H8C1 2179 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 SNTNA6NMZ2 147 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms