RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DPCDQ9BVM2 203 aaPredicted RBP15.23■□□□□ 0.03
USP28-208ENST00000540438 KLRF1Q9NZS2 232 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 EIF3KQ9UBQ5 218 aaKnown RBP15.23■□□□□ 0.03
USP28-208ENST00000540438 TRAV1-2A0A0B4J238 106 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 OR4C45A6NMZ5 311 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 ANOS1P23352 680 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 GGTLC2Q14390 218 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 LINC00303Q3SY05 128 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 ZNF684Q5T5D7 378 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 PHF19Q5T6S3 580 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 NHLRC1Q6VVB1 395 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 RNF144BQ7Z419 303 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 CDC20BQ86Y33 519 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 ZNF501Q96CX3 271 aaPredicted RBP15.22■□□□□ 0.03
USP28-208ENST00000540438 C20orf85Q9H1P6 137 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 GHITMQ9H3K2 345 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 ZNF69Q9UC07 566 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 SPTBN2O15020 2390 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 TRBV11-1A0A0K0K1C0 115 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 A0A1B0GX78 115 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 AIPO00170 330 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 ITGA10O75578 1167 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 ABHD16AO95870 558 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 HEXBP07686 556 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 CDAP32320 146 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 PTH2RP49190 550 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 CCR9P51686 369 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 PRSS12P56730 875 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 OR11G2Q8NGC1 345 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 KCTD12Q96CX2 325 aaKnown RBP15.22■□□□□ 0.03
USP28-208ENST00000540438 ZC3HAV1LQ96H79 300 aaKnown RBP15.22■□□□□ 0.03
USP28-208ENST00000540438 DOCK7Q96N67 2140 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 C10orf142B7Z368 130 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 TSPAN2O60636 221 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 NOS1APO75052 506 aaPredicted RBP15.22■□□□□ 0.03
USP28-208ENST00000540438 F10P00742 488 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 P2RX1P51575 399 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 TRAM1Q15629 374 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 ZNF627Q7L945 461 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 OR2T35Q8NGX2 323 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 KLHL15Q96M94 604 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 SOX7Q9BT81 388 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 SEC61A2Q9H9S3 476 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 CA10Q9NS85 328 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 PPIEQ9UNP9 301 aaKnown RBP15.22■□□□□ 0.03
USP28-208ENST00000540438 PCDHGA5Q9Y5G8 931 aa15.22■□□□□ 0.03
USP28-208ENST00000540438 CFIP05156 583 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 ZNF81P51508 661 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 AFF3P51826 1226 aaKnown RBP15.21■□□□□ 0.03
USP28-208ENST00000540438 KLF9Q13886 244 aaPredicted RBP15.21■□□□□ 0.03
USP28-208ENST00000540438 GSG1Q2KHT4 349 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 UBE2NLQ5JXB2 153 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 JAGN1Q8N5M9 183 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.21■□□□□ 0.03
USP28-208ENST00000540438 OR56B4Q8NH76 319 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 S100A16Q96FQ6 103 aaKnown RBP15.21■□□□□ 0.03
USP28-208ENST00000540438 LAT2Q9GZY6 243 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 ADAM19Q9H013 955 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 FOXJ3Q9UPW0 622 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 CAMK2AQ9UQM7 478 aa15.21■□□□□ 0.03
USP28-208ENST00000540438 PRSS37A4D1T9 235 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 ALDOBP05062 364 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 TACSTD2P09758 323 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 PGCP20142 388 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 MMP15P51511 669 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 CLDN6P56747 220 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 CAMK2DQ13557 499 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 CCDC58Q4VC31 144 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 OR8H3Q8N146 312 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 GALNT6Q8NCL4 622 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 OR7G1Q8NGA0 311 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 ZFAND1Q8TCF1 268 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 ABHD6Q9BV23 337 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 TAS2R4Q9NYW5 299 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 ABRACLQ9P1F3 81 aa15.21■□□□□ 0.02
USP28-208ENST00000540438 TRAV36DV7A0A075B6V5 113 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 ZNHIT1O43257 154 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 C1QBP02746 253 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 POU3F4P49335 361 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 TAS2R20P59543 309 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 ZP1P60852 638 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 CCL7P80098 99 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 POU4F3Q15319 338 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 PCGF3Q3KNV8 242 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 EEF1A1P5Q5VTE0 462 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 ASPHD2Q6ICH7 369 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 COX15Q7KZN9 410 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 MAMDC2Q7Z304 686 aaPredicted RBP15.2■□□□□ 0.02
USP28-208ENST00000540438 DND1Q8IYX4 353 aaKnown RBP15.2■□□□□ 0.02
USP28-208ENST00000540438 OR10G3Q8NGC4 313 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 SMIM4Q8WVI0 70 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 PMM1Q92871 262 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 CMBLQ96DG6 245 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 C1QTNF6Q9BXI9 259 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 MYO7BQ6PIF6 2116 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 A0A1W2PQM1 296 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 FITM1A5D6W6 292 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 RGS13O14921 159 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 RAMP1O60894 148 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 OR2J2O76002 312 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms