RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CTPS2Q9NRF8 586 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 SMOXQ9NWM0 555 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 GIN1Q9NXP7 522 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 TAS2R1Q9NYW7 299 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 CD274Q9NZQ7 290 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 TMEM181Q9P2C4 612 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 GALPQ9UBC7 116 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 MRM2Q9UI43 246 aaKnown RBP2.72□□□□□ -1.97
CD44-229ENST00000528672 CLEC4EQ9ULY5 219 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 MGAT4AQ9UM21 535 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 NPIPA1Q9UND3 350 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 SLC22A13Q9Y226 551 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 PIGLQ9Y2B2 252 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 CA5BQ9Y2D0 317 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 MMP24Q9Y5R2 645 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 NUBP2Q9Y5Y2 271 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 URGCP-MRPS24S4R325 110 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 KDM5BQ9UGL1 1544 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 NUP155O75694 1391 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 PNPLA6Q8IY17 1366 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 RTL9Q8NET4 1388 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 MYH15Q9Y2K3 1946 aa2.72□□□□□ -1.97
CD44-229ENST00000528672 TRBV7-9A0A0J9YWB2 115 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 A6NIZ1 184 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 RFPL4AA6NLU0 287 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 A8MUA0 341 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SERPINE3A8MV23 424 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 RFPL4AL1F8VTS6 287 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 RNASEK-C17orf49H0YIS7 233 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 CCRL2O00421 344 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 DLGAP1O14490 977 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 ARPC5O15511 151 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 TIMM8AO60220 97 aaPredicted RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 TOM1O60784 492 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 ZG16O60844 167 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 OR2F2O95006 317 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 CST4P01036 141 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 JCHAINP01591 159 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SERPINE2P07093 398 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 ERCC1P07992 297 aaPredicted RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 UGT1A4P22310 534 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 CXCR2P25025 360 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 ATP5A1P25705 553 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 HNRNPH3P31942 346 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 OTX1P32242 354 aaPredicted RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 PHBP35232 272 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 UGT1A3P35503 534 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 UGT1A5P35504 534 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 BTDP43251 543 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 MRPL19P49406 292 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 RPL14P50914 215 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 RAB13P51153 203 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 PRELPP51888 382 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 TMEM50BP56557 158 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 MAGOHP61326 146 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 NAA20P61599 178 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 RPS6P62753 249 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 GNB1P62873 340 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SRPXP78539 464 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 STX4Q12846 297 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 TRAM2Q15035 370 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 ARL6IP1Q15041 203 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SLC9A3R2Q15599 337 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 VAMP3Q15836 100 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 KCNJ8Q15842 424 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 DEFB115Q30KQ5 88 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SNAI3Q3KNW1 292 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SBK1Q52WX2 424 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 KLHL12Q53G59 568 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 PIGGQ5H8A4 983 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 ELP2Q6IA86 826 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 OR4F3Q6IEY1 312 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 REEP3Q6NUK4 255 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 ACSM5Q6NUN0 579 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 FAM71F2Q6NXP2 309 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 RNASEKQ6P5S7 137 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 SPESP1Q6UW49 350 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SSX9Q7RTT3 188 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 NOTCH2NLQ7Z3S9 236 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 SCD5Q86SK9 330 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 MOB3BQ86TA1 216 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 RALGPS2Q86X27 583 aaPredicted RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 CARM1Q86X55 608 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 BOD1L2Q8IYS8 172 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 HS3ST5Q8IZT8 346 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 TMEM156Q8N614 296 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 Q8N9G6 341 aaPredicted RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 CATSPER1Q8NEC5 780 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 OR5B17Q8NGF7 314 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 OR5T3Q8NGG3 340 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 OR1F12Q8NHA8 337 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 RNASE11Q8TAA1 199 aaKnown RBP2.71□□□□□ -1.98
CD44-229ENST00000528672 M1APQ8TC57 530 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 CXorf40AQ8TE69 158 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 TBCKQ8TEA7 893 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 CA5BP1Q8WTZ4 195 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 DNAJB3Q8WWF6 145 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 DNASE2BQ8WZ79 361 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 NR4A3Q92570 626 aa2.71□□□□□ -1.98
CD44-229ENST00000528672 HGDQ93099 445 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms