RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MRPL13Q9BYD1 178 aaKnown RBP18.51■□□□□ 0.55
VPS28-209ENST00000528142 STMN3Q9NZ72 180 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 KNTC1P50748 2209 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 FAM186AA6NE01 2351 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 IGKV1D-43A0A0B4J1Z2 117 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 LOC102725191A0A1B0GVB3 256 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 AQP7P3A6NL99 342 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 SULT2B1O00204 365 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 DLL1O00548 723 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 MAGEB3O15480 346 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 TRAF3IP2O43734 574 aaPredicted RBP18.51■□□□□ 0.55
VPS28-209ENST00000528142 ZFPL1O95159 310 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 PMS2P2O95744 297 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 UCHL1P09936 223 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 CFL1P23528 166 aaKnown RBP18.51■□□□□ 0.55
VPS28-209ENST00000528142 CYB561P49447 251 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 NHLH1Q02575 133 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 DDI2Q5TDH0 399 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 RAET1LQ5VY80 246 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 DNM1P34Q6PK57 102 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 TRILQ7L0X0 811 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 LYSMD2Q8IV50 215 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 FAM83FQ8NEG4 500 aaPredicted RBP18.51■□□□□ 0.55
VPS28-209ENST00000528142 ASB17Q8WXJ9 295 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 NKD1Q969G9 470 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 OXGR1Q96P68 337 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 EMC6Q9BV81 110 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 ABCB10Q9NRK6 738 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 SLCO1C1Q9NYB5 712 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 IKZF2Q9UKS7 526 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 ALPK2Q86TB3 2170 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 EML6Q6ZMW3 1958 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 hCG_2014768A0A024R1R8 64 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 TRAV1-2A0A0B4J238 106 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 RAMP1O60894 148 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 RPP14O95059 124 aaKnown RBP18.5■□□□□ 0.55
VPS28-209ENST00000528142 MYL9P24844 172 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 H3F3AP84243 136 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 ALKBH1Q13686 389 aaKnown RBP18.5■□□□□ 0.55
VPS28-209ENST00000528142 DCAF10Q5QP82 559 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 LRRC69Q6ZNQ3 347 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 SLC26A10Q8NG04 563 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 RGP1Q92546 391 aaPredicted RBP18.5■□□□□ 0.55
VPS28-209ENST00000528142 OR8B4Q96RC9 309 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 DEPPQ9NTK1 212 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 FRRS1LQ9P0K9 344 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 ZNF281Q9Y2X9 895 aa18.5■□□□□ 0.55
VPS28-209ENST00000528142 A0A0G2JK05 382 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 ISPDA4D126 451 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 LRRC3CA6NJW4 275 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 HSPB2A8KAH6 182 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 MPZL1O95297 269 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 KLK2P20151 261 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 SRD5A2P31213 254 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 B3GALT5-AS1P59052 145 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 ADAM8P78325 824 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 HSPB2Q16082 182 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 MEP1BQ16820 701 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 STEAP3Q658P3 488 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 SLC18B1Q6NT16 456 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 PHYHIPQ92561 330 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 COX4I2Q96KJ9 171 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 PIGQQ9BRB3 760 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 DAPK2Q9UIK4 370 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 A0A087WV48 116 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 KHDRBS3O75525 346 aaKnown RBP18.49■□□□□ 0.55
VPS28-209ENST00000528142 SPARCP09486 303 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 RAC1P63000 192 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 PPP3R1P63098 170 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 ROM1Q03395 351 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 ZNF79Q15937 498 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 PCK2Q16822 640 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 YIF1BQ5BJH7 314 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 HBMQ6B0K9 141 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 TMEM225Q6GV28 225 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 OR14A2Q96R54 314 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 TTYH2Q9BSA4 534 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 CCDC32Q9BV29 185 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 COMMD3Q9UBI1 195 aa18.49■□□□□ 0.55
VPS28-209ENST00000528142 CNOT1A5YKK6 2376 aaKnown RBP18.48■□□□□ 0.55
VPS28-209ENST00000528142 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.48■□□□□ 0.55
VPS28-209ENST00000528142 ARL6IP5O75915 188 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 CSRP1P21291 193 aaKnown RBP18.48■□□□□ 0.55
VPS28-209ENST00000528142 CD96P40200 585 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 OR10A3P58181 314 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.48■□□□□ 0.55
VPS28-209ENST00000528142 GPAT4Q86UL3 456 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 ZNF454Q8N9F8 522 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 IP6K3Q96PC2 410 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 MFRPQ9BY79 579 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 CEP250Q9BV73 2442 aa18.48■□□□□ 0.55
VPS28-209ENST00000528142 A0A1W2PPK0 400 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 PIN1P1O15428 100 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 RFPL3SP0C7P2 107 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 OCM2P0CE71 109 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 OCMP0CE72 109 aaPredicted RBP18.47■□□□□ 0.55
VPS28-209ENST00000528142 PGA4P0DJD7 388 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 PGA3P0DJD8 388 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 THBS2P35442 1172 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 OC90Q02509 493 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms