RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MUCL1Q96DR8 90 aa8.87□□□□□ -0.99
VPS28-204ENST00000526054 DUS3LQ96G46 650 aaKnown RBP8.87□□□□□ -0.99
VPS28-204ENST00000526054 GPR35Q9HC97 309 aa8.87□□□□□ -0.99
VPS28-204ENST00000526054 FAIMQ9NVQ4 179 aa8.87□□□□□ -0.99
VPS28-204ENST00000526054 VNN3Q9NY84 501 aa8.87□□□□□ -0.99
VPS28-204ENST00000526054 SIGLEC7Q9Y286 467 aa8.87□□□□□ -0.99
VPS28-204ENST00000526054 ARRDC5A6NEK1 342 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 A6NIZ1 184 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 OR5H1A6NKK0 313 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 RPL36A-HNRNPH2H7BZ11 118 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 PTP4A3O75365 173 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 TIPRLO75663 272 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 CD14P08571 375 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 PGA4P0DJD7 388 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 PGA3P0DJD8 388 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 ACADSP16219 412 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 CDH2P19022 906 aaPredicted RBP8.86□□□□□ -0.99
VPS28-204ENST00000526054 GSTM3P21266 225 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 SLC6A6P31641 620 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 ACVR1BP36896 505 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 CDH11P55287 796 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 RAP1BP61224 184 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 RPL27P61353 136 aaKnown RBP8.86□□□□□ -0.99
VPS28-204ENST00000526054 RAP1AP62834 184 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 PPP1R8Q12972 351 aaKnown RBP8.86□□□□□ -0.99
VPS28-204ENST00000526054 RIPK1Q13546 671 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 FHL1Q13642 323 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 PPA1Q15181 289 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 GABRA6Q16445 453 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 CEACAM16Q2WEN9 425 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 PGGHGQ32M88 737 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 TIMM23BQ5SRD1 257 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 ARMC4Q5T2S8 1044 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 C1QTNF12Q5T7M4 302 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 GPR139Q6DWJ6 353 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 ZNF770Q6IQ21 691 aaPredicted RBP8.86□□□□□ -0.99
VPS28-204ENST00000526054 SMARCD3Q6STE5 483 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 AQP11Q8NBQ7 271 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 OR52L1Q8NGH7 329 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 OR1K1Q8NGR3 316 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 FNDC8Q8TC99 324 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 TMEM54Q969K7 222 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 GPX7Q96SL4 187 aaPredicted RBP8.86□□□□□ -0.99
VPS28-204ENST00000526054 ALG12Q9BV10 488 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 KATNB1Q9BVA0 655 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 REPIN1Q9BWE0 567 aaKnown RBP8.86□□□□□ -0.99
VPS28-204ENST00000526054 DGCR6LQ9BY27 220 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 REG4Q9BYZ8 158 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 CRLF2Q9HC73 371 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 ARMC1Q9NVT9 282 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 GLTPQ9NZD2 209 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 GRHPRQ9UBQ7 328 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 MGAT4BQ9UQ53 548 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 AMDHD2Q9Y303 409 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 AP4S1Q9Y587 144 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 CDH10Q9Y6N8 788 aa8.86□□□□□ -0.99
VPS28-204ENST00000526054 CUBNO60494 3623 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 FBN3Q75N90 2809 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 DPRXA6NFQ7 191 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 ZNF99A8MXY4 864 aaPredicted RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 XKRYO14609 159 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 MGRN1O60291 552 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 TRMUO75648 421 aaKnown RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 IGHV4-39P01824 125 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 FASP25445 335 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 RPS6KA3P51812 740 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 FOXG1P55316 489 aaPredicted RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 UBE2NP61088 152 aaKnown RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 ERVK-25P63136 954 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 CD47Q08722 323 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 ATP6AP1Q15904 470 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 RFX4Q33E94 735 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 TBRG1Q3YBR2 411 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 PHYHD1Q5SRE7 291 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 ZFP1Q6P2D0 407 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 ANKRD16Q6P6B7 361 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 DPY19L2P2Q6ZN68 376 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 ZNF620Q6ZNG0 422 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 LINGO2Q7L985 606 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 SPATA3Q8NHX4 192 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 NRBF2Q96F24 287 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 ZNF570Q96NI8 536 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 MUS81Q96NY9 551 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 TSPAN32Q96QS1 320 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 GPA33Q99795 319 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 TRAF4Q9BUZ4 470 aaPredicted RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 OR52D1Q9H346 318 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 BARX1Q9HBU1 254 aaPredicted RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 OBP2BQ9NPH6 170 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 SLC17A5Q9NRA2 495 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 CISD1Q9NZ45 108 aaKnown RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 PDP1Q9P0J1 537 aaPredicted RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 ZNF346Q9UL40 294 aaKnown RBP8.85□□□□□ -0.99
VPS28-204ENST00000526054 POFUT2Q9Y2G5 429 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 CADP27708 2225 aa8.85□□□□□ -0.99
VPS28-204ENST00000526054 COL6A5A8TX70 2615 aa8.84□□□□□ -0.99
VPS28-204ENST00000526054 FBN1P35555 2871 aaKnown RBP8.84□□□□□ -0.99
VPS28-204ENST00000526054 TEX13CA0A0J9YWL9 993 aa8.84□□□□□ -0.99
VPS28-204ENST00000526054 SHISA9B4DS77 424 aa8.84□□□□□ -0.99
VPS28-204ENST00000526054 ABCD4O14678 606 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms