RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	CDK5	Q00535	292 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	MYBPC1	Q00872	1141 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	DAG1	Q14118	895 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	PPA1	Q15181	289 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	RCN1	Q15293	331 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	ANKRD34A	Q69YU3	496 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	KLHL24	Q6TFL4	600 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	ZNF813	Q6ZN06	617 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	FOXL2NB	Q6ZUU3	175 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	C22orf34	Q6ZV56	151 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	WDR31	Q8NA23	367 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	C14orf79	Q96F83	325 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	NGB	Q9NPG2	151 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	SLC25A15	Q9Y619	301 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	CASK	O14936	926 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	SLC2A10	O95528	541 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	BAG2	O95816	211 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	WNT11	O96014	354 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	REN	P00797	406 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	IFNG	P01579	166 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	HMGN1	P05114	100 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	ALPL	P05186	524 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	ANPEP	P15144	967 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	CDH2	P19022	906 aa	Predicted RBP	18.17	■□□□□ 0.5
CD44-222	ENST00000526025	NPR2	P20594	1047 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	COL8A1	P27658	744 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	CRABP1	P29762	137 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	CRISP1	P54107	249 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	FMOD	Q06828	376 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	SNTB1	Q13884	538 aa	Known RBP	18.17	■□□□□ 0.5
CD44-222	ENST00000526025	DNM1P34	Q6PK57	102 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	SEZ6L2	Q6UXD5	910 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	DPPA2	Q7Z7J5	298 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	FAM169B	Q8N8A8	192 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	NPEPL1	Q8NDH3	523 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	OR4K13	Q8NH42	304 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	DDO	Q99489	341 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	CIB1	Q99828	191 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	TEX12	Q9BXU0	123 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	GABARAPL3	Q9BY60	117 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	SYT4	Q9H2B2	425 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	DCLRE1B	Q9H816	532 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	CMC2	Q9NRP2	79 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	UGT2A1	Q9Y4X1	527 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	ABCA4	P78363	2273 aa		18.17	■□□□□ 0.5
CD44-222	ENST00000526025	IGKV1D-43	A0A0B4J1Z2	117 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025		H7C1C5	153 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	OR8G3P	P0DMU2	310 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	ALDH3A2	P51648	485 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	UBE2N	P61088	152 aa	Known RBP	18.16	■□□□□ 0.5
CD44-222	ENST00000526025	LCN6	P62502	163 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	18.16	■□□□□ 0.5
CD44-222	ENST00000526025	GINS1	Q14691	196 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	HIKESHI	Q53FT3	197 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	ZNF362	Q5T0B9	420 aa	Predicted RBP	18.16	■□□□□ 0.5
CD44-222	ENST00000526025	LEG1	Q6P5S2	330 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	ZNF771	Q7L3S4	317 aa	Predicted RBP	18.16	■□□□□ 0.5
CD44-222	ENST00000526025	OR52E2	Q8NGJ4	325 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	NANOS1	Q8WY41	292 aa	Known RBP	18.16	■□□□□ 0.5
CD44-222	ENST00000526025	NMNAT3	Q96T66	252 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	C8orf4	Q9NR00	106 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	FKBP7	Q9Y680	259 aa		18.16	■□□□□ 0.5
CD44-222	ENST00000526025	CENPE	Q02224	2701 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	FAM221A	A4D161	298 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	EI24	O14681	340 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	RRP9	O43818	475 aa	Known RBP	18.15	■□□□□ 0.5
CD44-222	ENST00000526025	KHDRBS3	O75525	346 aa	Known RBP	18.15	■□□□□ 0.5
CD44-222	ENST00000526025	FARS2	O95363	451 aa	Known RBP	18.15	■□□□□ 0.5
CD44-222	ENST00000526025	B4GALT1	P15291	398 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	CTLA4	P16410	223 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	POU1F1	P28069	291 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	C3orf36	Q3SXR2	165 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	SLC35F1	Q5T1Q4	408 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	ZBTB46	Q86UZ6	589 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	SLC22A24	Q8N4F4	322 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	CBR4	Q8N4T8	237 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	EME1	Q96AY2	570 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	PRRG3	Q9BZD7	231 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	RACGAP1	Q9H0H5	632 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	SIAE	Q9HAT2	523 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	ORC6	Q9Y5N6	252 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	FLNB	O75369	2602 aa	Known RBP	18.15	■□□□□ 0.5
CD44-222	ENST00000526025	UNC79	Q9P2D8	2635 aa		18.15	■□□□□ 0.5
CD44-222	ENST00000526025	OR6C68	A6NDL8	312 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025		A6NNC1	897 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	RIIAD1	A6NNX1	92 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	SLC16A7	O60669	478 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	MITF	O75030	526 aa	Predicted RBP	18.14	■□□□□ 0.49
CD44-222	ENST00000526025	ZNF3	P17036	446 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	GUCA1A	P43080	201 aa	Predicted RBP	18.14	■□□□□ 0.49
CD44-222	ENST00000526025	SLC25A1	P53007	311 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	RAD23A	P54725	363 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	NR1H2	P55055	460 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	PTGES3	Q15185	160 aa	Known RBP	18.14	■□□□□ 0.49
CD44-222	ENST00000526025	BEX5	Q5H9J7	111 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	ACSM5	Q6NUN0	579 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	SLC37A3	Q8NCC5	494 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	SDR9C7	Q8NEX9	313 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	OR52N5	Q8NH56	324 aa		18.14	■□□□□ 0.49
CD44-222	ENST00000526025	NSMAF	Q92636	917 aa		18.14	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms