RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 UCN3Q969E3 161 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 FGF20Q9NP95 211 aaPredicted RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 PRDM7Q9NQW5 492 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 PISDQ9UG56 409 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 LOC100289279A0A1B0GTE1 492 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 SLC22A23A1A5C7 686 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 PRSS23O95084 383 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 OLFM2O95897 454 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 HOXB3P14651 431 aaPredicted RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 GABRB1P18505 474 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 OMGP23515 440 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 GZMKP49863 264 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 CDK5R1Q15078 307 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 SLC25A35Q3KQZ1 300 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 SLC16A14Q7RTX9 510 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 CCDC190Q86UF4 302 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 MKXQ8IYA7 352 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 CMTM4Q8IZR5 234 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 ZNF784Q8NCA9 323 aaPredicted RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 OR56B1Q8NGI3 324 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 OR5M1Q8NGP8 315 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 KCNG3Q8TAE7 436 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 STK35Q8TDR2 534 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 PIGTQ969N2 578 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 MRPL38Q96DV4 380 aaKnown RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 ZNF578Q96N58 590 aaPredicted RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 BANF2Q9H503 90 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 MMACHCQ9Y4U1 282 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 ETV7Q9Y603 341 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 DOCK3Q8IZD9 2030 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 CACNA1EQ15878 2313 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 BET1O15155 118 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 HOXC8P31273 242 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 NPY4RP50391 375 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 TAS2R20P59543 309 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 DCDP81605 110 aaKnown RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 RPL18Q07020 188 aaKnown RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 RBM39Q14498 530 aaKnown RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 ELAVL1Q15717 326 aaKnown RBP11.6□□□□□ -0.55
USP53-209ENST00000514665 SLC22A24Q8N4F4 322 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 SIRT6Q8N6T7 355 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 OR4Q3Q8NH05 313 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 ACAD8Q9UKU7 415 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 SLC22A13Q9Y226 551 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 HS3ST3A1Q9Y663 406 aa11.6□□□□□ -0.55
USP53-209ENST00000514665 A0A0A6YYD5 115 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 TMEM235A6NFC5 223 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 VSTM5A8MXK1 200 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 HSPB6O14558 160 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 ICMTO60725 284 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 MED6O75586 246 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 PMP2P02689 132 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 SNRNP70P08621 437 aaKnown RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 SDHBP21912 280 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 LUMP51884 338 aaPredicted RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 EMP3P54852 163 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 GFERP55789 205 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 RPL27P61353 136 aaKnown RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 ZNF547Q8IVP9 402 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 LINC01555Q8NAE3 123 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 SMIM19Q96E16 107 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 SULT4A1Q9BR01 284 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 SEMA4CQ9C0C4 833 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 ENKD1Q9H0I2 346 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 CDCP1Q9H5V8 836 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 AUNIPQ9H7T9 357 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 ZNF346Q9UL40 294 aaKnown RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 PPIL1Q9Y3C6 166 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 ARFGEF1Q9Y6D6 1849 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 A6NCN8 305 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 EFNA3P52797 238 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 AAED1Q7RTV5 226 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 AGBL5Q8NDL9 886 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 PAPOLGQ9BWT3 736 aaKnown RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 TEX101Q9BY14 249 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 CCDC88CQ9P219 2028 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 DLEC1Q9Y238 1755 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 A0A0D9SG52 128 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 PRAMEF4O60810 478 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 STK17BO94768 372 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 TGM1P22735 817 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 EMDP50402 254 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 PPT1P50897 306 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 ATP1B3P54709 279 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 PMPCAQ10713 525 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 NR0B2Q15466 257 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 STK11Q15831 433 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 SSX1Q16384 188 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 C1QTNF12Q5T7M4 302 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 PRAMEF9Q5VWM5 478 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 RFPL4BQ6ZWI9 263 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 RAB11FIP2Q7L804 512 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 OVCH1Q7RTY7 1134 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 GRINAQ7Z429 371 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 CA13Q8N1Q1 262 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 DUSP23Q9BVJ7 150 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 BIN3Q9NQY0 253 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 A0A0A6YYJ9 748 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 IFITM5A6NNB3 132 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 FOSL2P15408 326 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms