RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PNPP00491 289 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 APOC3P02656 99 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 CTSEP14091 401 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 MNDAP41218 407 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 TNFRSF4P43489 277 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC25A1P53007 311 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 PSMD4P55036 377 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 DHODHQ02127 395 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ATXN7L3Q14CW9 347 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ETFDHQ16134 617 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 BEX5Q5H9J7 111 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 MANEAQ5SRI9 462 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 C17orf107Q6ZR85 190 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 NDUFAF7Q7L592 441 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF595Q8IYB9 648 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 BOLLQ8N9W6 283 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 LRRC75AQ8NAA5 344 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 SCARB1Q8WTV0 552 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 TAAR8Q969N4 342 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 GAL3ST4Q96RP7 486 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 MRI1Q9BV20 369 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 NXF5Q9H1B4 397 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 PNO1Q9NRX1 252 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 CGGBP1Q9UFW8 167 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF230Q9UIE0 474 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 CLDN16Q9Y5I7 305 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 EML5Q05BV3 1969 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 LDOC1O95751 146 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 RENP00797 406 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 TNFP01375 233 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 RLN2P04090 185 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 SPARCP09486 303 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 PPP3CBP16298 524 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 TPMTP51580 245 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 GMFBP60983 142 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ISXQ2M1V0 245 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 STEAP1BQ6NZ63 245 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 C4orf45Q96LM5 186 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 MAP3K3Q99759 626 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 GABRG3Q99928 467 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 RTN4RQ9BZR6 473 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 FBXO4Q9UKT5 387 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM184BQ9Y519 407 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 RP1P56715 2156 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 OR6A2O95222 327 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 AKAIN1P0CW23 69 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ZP3P21754 424 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TOMM34Q15785 309 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF660Q6AZW8 331 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM92Q6UXU6 159 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 C15orf40Q8WUR7 153 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 NKD1Q969G9 470 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SEC22AQ96IW7 307 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 GPX7Q96SL4 187 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM106CQ9BVX2 250 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TMPRSS13Q9BYE2 586 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 FARSAQ9Y285 508 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 BRWD1Q9NSI6 2320 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SCDO00767 359 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TNFRSF10CO14798 259 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 HCRTR2O43614 444 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ACHEP22303 614 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 UBE2IP63279 158 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ATRAIDQ6UW56 229 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 PDZD9Q8IXQ8 264 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC22A18ASQ8N1D0 253 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 KDM8Q8N371 416 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 OR6N1Q8NGY5 312 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 LHFPL5Q8TAF8 219 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 DCBLD2Q96PD2 775 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 UTP23Q9BRU9 249 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 PTDSS2Q9BVG9 487 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TINAGL1Q9GZM7 467 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 EVA1AQ9H8M9 152 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 C12orf10Q9HB07 376 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 UBQLN4Q9NRR5 601 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TRBV5-7A0A0A0MS05 114 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 C17orf105B2RV13 164 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 CSF1P09603 554 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 PNMTP11086 282 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 BIKQ13323 160 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 GK2Q14410 553 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SCGB2B2Q4G0G5 96 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 LIN54Q6MZP7 749 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 KRT77Q7Z794 578 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 FAM131CQ96AQ9 280 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 APMAPQ9HDC9 416 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM212A6NML5 194 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF264O43296 627 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC16A7O60669 478 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF254O75437 659 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 B3GALNT1O75752 331 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 RAB3DO95716 219 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 HOXC4P09017 264 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ASAH2BP0C7U1 165 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 AKT2P31751 481 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 RAB11BQ15907 218 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 NKPD1Q17RQ9 610 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 PRSS58Q8IYP2 241 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF615Q8N8J6 731 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms