RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RAB29O14966 203 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 KMOO15229 486 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 MRPS12O15235 138 aaKnown RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 EEDO75530 441 aaKnown RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 PABPC4LP0CB38 370 aaKnown RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 NAA10P41227 235 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 NSG1P42857 185 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 TMED10P49755 219 aaKnown RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 NCBP2P52298 156 aaKnown RBP eCLIP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ACTA2P62736 377 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ACTG2P63267 376 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ACTC1P68032 377 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ACTA1P68133 377 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 TWF1Q12792 350 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 GGTLC2Q14390 218 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 RCN1Q15293 331 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 TSPO2Q5TGU0 170 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 PRAMEF20Q5VT98 475 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ANKRD26P1Q6NSI1 321 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 METAP1DQ6UB28 335 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 LYPD2Q6UXB3 125 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 Q6ZVH6 145 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ABHD13Q7L211 337 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 STRADAQ7RTN6 431 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 LINC01551Q86U37 167 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 TTC5Q8N0Z6 440 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 GTPBP8Q8N3Z3 284 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 FBXL13Q8NEE6 735 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 OR10R2Q8NGX6 335 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ACMSDQ8TDX5 336 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 ELMO1Q92556 727 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 KIFAP3Q92845 792 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 FAM104AQ969W3 186 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 EXOSC8Q96B26 276 aaKnown RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 CEP170P1Q96L14 293 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 RACGAP1Q9H0H5 632 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 LINC00597Q9H2U6 94 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 FGF20Q9NP95 211 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 SAMSN1Q9NSI8 373 aaKnown RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 DCAF16Q9NXF7 216 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 RBAKQ9NYW8 714 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 LSM7Q9UK45 103 aaKnown RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 PITPNC1Q9UKF7 332 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 RAB26Q9ULW5 256 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 GOLT1BQ9Y3E0 138 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 WDR62O43379 1518 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 IGLV3-16A0A075B6K0 115 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 A0A096LNJ9 63 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 SMCO2A6NFE2 343 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 C11orf94C9JXX5 98 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 F6UB75 175 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 LSM1O15116 133 aaKnown RBP2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 FTH1P02794 183 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 ANXA5P08758 320 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 FOLR1P15328 257 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 OMGP23515 440 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 HRH1P35367 487 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 RFX3P48380 749 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 UBE2AP49459 152 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF136P52737 540 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 NUTF2P61970 127 aaKnown RBP2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 PON3Q15166 354 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 CCNJQ5T5M9 372 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 CERS6Q6ZMG9 384 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 Q6ZSR3 168 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 OAFQ86UD1 273 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 PCP2Q8IVA1 136 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF502Q8TBZ5 544 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 SLC7A13Q8TCU3 470 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 SLC38A4Q969I6 547 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 PKNOX2Q96KN3 472 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 SLC29A1Q99808 456 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 MRPL37Q9BZE1 423 aaKnown RBP2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 NEK6Q9HC98 313 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 UXTQ9UBK9 157 aaPredicted RBP2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 CD84Q9UIB8 345 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 KLK12Q9UKR0 248 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 ING4Q9UNL4 249 aa2.59□□□□□ -1.99
HMGB1P28-201ENST00000507778 ASTN1O14525 1302 aa2.59□□□□□ -2
HMGB1P28-201ENST00000507778 IGLV4-69A0A075B6H9 119 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 TRBV11-1A0A0K0K1C0 115 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 ZNF816-ZNF321PA0A0X1KG74 233 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 TCP11X1B4DZS4 312 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 CD5LO43866 347 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 DFNA5O60443 496 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 OR2J3O76001 311 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 UTS2O95399 124 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 RAB3DO95716 219 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 TSPAN13O95857 204 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 KRT14P02533 472 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 ZNF250P15622 560 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 CYB561P49447 251 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 MNAT1P51948 309 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 ADARB1P78563 741 aaKnown RBP2.58□□□□□ -2
HMGB1P28-201ENST00000507778 SLC7A9P82251 487 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 PAX5Q02548 391 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 TGM3Q08188 693 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 TCP10Q12799 353 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 C9orf135Q5VTT2 229 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 LRRC66Q68CR7 880 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms