RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 ALG12Q9BV10 488 aa13.57□□□□□ -0.24
HDAC4-213ENST00000496347 TXNIPQ9H3M7 391 aa13.57□□□□□ -0.24
HDAC4-213ENST00000496347 GMPR2Q9P2T1 348 aaKnown RBP13.57□□□□□ -0.24
HDAC4-213ENST00000496347 RPS6KA6Q9UK32 745 aa13.57□□□□□ -0.24
HDAC4-213ENST00000496347 M0R233 179 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 FFAR1O14842 300 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 GPRIN2O60269 458 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SNX3O60493 162 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 TRMUO75648 421 aaKnown RBP13.56□□□□□ -0.24
HDAC4-213ENST00000496347 PRSS23O95084 383 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SNAP29O95721 258 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SLC9A3P48764 834 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 MRPS34P82930 218 aaKnown RBP13.56□□□□□ -0.24
HDAC4-213ENST00000496347 RAB39AQ14964 217 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 FKBP9P1Q75LS8 142 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SLC16A14Q7RTX9 510 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 CYP4Z1Q86W10 505 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 NRMQ8IXM6 262 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 CDK20Q8IZL9 346 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 RNF113BQ8IZP6 322 aaKnown RBP13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SYT14Q8NB59 555 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 ZNF540Q8NDQ6 660 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SLC30A7Q8NEW0 376 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 NMD3Q96D46 503 aaKnown RBP13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SH3GL3Q99963 347 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 NDEL1Q9GZM8 345 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 FAM107BQ9H098 131 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SNX13Q9Y5W8 968 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 DNHD1Q96M86 4753 aa13.56□□□□□ -0.24
HDAC4-213ENST00000496347 SLC22A23A1A5C7 686 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 A8MV72 311 aaPredicted RBP13.55□□□□□ -0.24
HDAC4-213ENST00000496347 SYNGR3O43761 229 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 PTHP01270 115 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 NR4A2P43354 598 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 SEC24CP53992 1094 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 PSME3P61289 254 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 PRKCDQ05655 676 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 CD47Q08722 323 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 TOP3AQ13472 1001 aaPredicted RBP13.55□□□□□ -0.24
HDAC4-213ENST00000496347 ZNF730Q6ZMV8 503 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 MBOAT2Q6ZWT7 520 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 RBM15BQ8NDT2 890 aaKnown RBP13.55□□□□□ -0.24
HDAC4-213ENST00000496347 KCNK17Q96T54 332 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 TMEM5Q9Y2B1 443 aa13.55□□□□□ -0.24
HDAC4-213ENST00000496347 STAB1Q9NY15 2570 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 TRAV27A0A087WT01 109 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 TMEM129A0AVI4 362 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 A6NIZ1 184 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 EFCAB9A8MZ26 197 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 J3KTA2 159 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 SLC2A10O95528 541 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 PATE4P0C8F1 98 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 MAKP20794 623 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 DRD4P21917 467 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 GIFP27352 417 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 YAP1P46937 504 aaKnown RBP13.54□□□□□ -0.24
HDAC4-213ENST00000496347 RAP1BP61224 184 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 RPL27P61353 136 aaKnown RBP13.54□□□□□ -0.24
HDAC4-213ENST00000496347 RAP1AP62834 184 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 TBC1D28Q2M2D7 210 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 OAFQ86UD1 273 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 PRIMA1Q86XR5 153 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 OR1J2Q8NGS2 313 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 OR13C2Q8NGS9 318 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 FGFBP3Q8TAT2 258 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 HDAC2Q92769 488 aaKnown RBP13.54□□□□□ -0.24
HDAC4-213ENST00000496347 MRPL37Q9BZE1 423 aaKnown RBP13.54□□□□□ -0.24
HDAC4-213ENST00000496347 LRMDAQ9H2I8 198 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 SIAEQ9HAT2 523 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 YAE1D1Q9NRH1 226 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 TMEM160Q9NX00 188 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 RHCGQ9UBD6 479 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 SAMD4AQ9UPU9 718 aaKnown RBP13.54□□□□□ -0.24
HDAC4-213ENST00000496347 UGT2A1Q9Y4X1 527 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 ENPP4Q9Y6X5 453 aa13.54□□□□□ -0.24
HDAC4-213ENST00000496347 IQCMA0A1B0GVH7 501 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 A0A1W2PRQ8 180 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 MMP7P09237 267 aaPredicted RBP13.53□□□□□ -0.24
HDAC4-213ENST00000496347 DAOP14920 347 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 GZMKP49863 264 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 LSM11P83369 360 aaKnown RBP eCLIP13.53□□□□□ -0.24
HDAC4-213ENST00000496347 MYBPC1Q00872 1141 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 PLP2Q04941 152 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 FMODQ06828 376 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 DGCR6Q14129 220 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 GGTLC2Q14390 218 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 CARTPTQ16568 116 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 MSMPQ1L6U9 139 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 THEM4Q5T1C6 240 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 CPLX4Q7Z7G2 160 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 LRRC75AQ8NAA5 344 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 ZNF519Q8TB69 540 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 NABP1Q96AH0 204 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 BPESC1Q9GZL8 116 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 KCNN2Q9H2S1 579 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 RNF121Q9H920 327 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 NMNAT1Q9HAN9 279 aaPredicted RBP13.53□□□□□ -0.24
HDAC4-213ENST00000496347 CDH20Q9HBT6 801 aa13.53□□□□□ -0.24
HDAC4-213ENST00000496347 ZNF346Q9UL40 294 aaKnown RBP13.53□□□□□ -0.24
HDAC4-213ENST00000496347 A0A087WUU8 490 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms