RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 KRTAP4-1Q9BYQ7 146 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 GCOM2Q9BZD3 368 aaPredicted RBP1.99□□□□□ -2.09
VPS50-219ENST00000495039 RPF2Q9H7B2 306 aaKnown RBP1.99□□□□□ -2.09
VPS50-219ENST00000495039 SUN2Q9UH99 717 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 SLC7A8Q9UHI5 535 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 IGHV5-51A0A0C4DH38 117 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 IGHV3-66A0A0C4DH42 116 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 A0A1W2PP18 115 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 A0A1W2PPE3 182 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 A0A1W2PPV9 198 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 ARHGEF35A5YM69 484 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 TMEM150BA6NC51 233 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 HIDE1A8MVS5 230 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 H0YHG0 523 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 B4GALT5O43286 388 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 C6orf47O95873 294 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 MRPL3P09001 348 aaKnown RBP1.98□□□□□ -2.09
VPS50-219ENST00000495039 PTMSP20962 102 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 KITLGP21583 273 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 CASP14P31944 242 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 CDKN1BP46527 198 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 TPMTP51580 245 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 KCNJ2P63252 427 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 TCP10Q12799 353 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 PON3Q15166 354 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 TGFBIQ15582 683 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 CCDC73Q6ZRK6 1079 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 FAM92BQ6ZTR7 304 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 KRTAP13-1Q8IUC0 172 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 EGFL6Q8IUX8 553 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 UBE2J2Q8N2K1 259 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 OR5W2Q8NH69 310 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 WFIKKN1Q96NZ8 548 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 OR2A5Q96R48 311 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 P2RX4Q99571 388 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 RSPO3Q9BXY4 272 aaPredicted RBP1.98□□□□□ -2.09
VPS50-219ENST00000495039 COX16Q9P0S2 106 aa1.98□□□□□ -2.09
VPS50-219ENST00000495039 CXCL11O14625 94 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 PPP1R2P9O14990 202 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 BET1O15155 118 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 FGGP02679 453 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 FABP3P05413 133 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 RHOXF2BP0C7M4 288 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 MCF2P10911 925 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 NCF2P19878 526 aaPredicted RBP1.97□□□□□ -2.09
VPS50-219ENST00000495039 CDKN2BP42772 138 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 CRYBB2P43320 205 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 MRPS22P82650 360 aaKnown RBP1.97□□□□□ -2.09
VPS50-219ENST00000495039 ECH1Q13011 328 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 CLINT1Q14677 625 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 GINS1Q14691 196 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 POU2AF1Q16633 256 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 C5orf47Q569G3 176 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 LY6G6FQ5SQ64 297 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 VAX1Q5SQQ9 334 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 KDELC1Q6UW63 502 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 HDDC2Q7Z4H3 204 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 OAFQ86UD1 273 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 STPG2Q8N412 459 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 HSD17B11Q8NBQ5 300 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 OR2L3Q8NG85 312 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 OR4S2Q8NH73 311 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 RHEBL1Q8TAI7 183 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 LKAAEAR1Q8TD35 194 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 PIBF1Q8WXW3 757 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 PIK3IP1Q96FE7 263 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 TCHPQ9BT92 498 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 MRPL37Q9BZE1 423 aaKnown RBP1.97□□□□□ -2.09
VPS50-219ENST00000495039 ETNK2Q9NVF9 386 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 KLHL28Q9NXS3 571 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 ZNF222Q9UK12 451 aa1.97□□□□□ -2.09
VPS50-219ENST00000495039 YTHDF2Q9Y5A9 579 aaKnown RBP1.97□□□□□ -2.09
VPS50-219ENST00000495039 TET2Q6N021 2002 aaPredicted RBP1.96□□□□□ -2.09
VPS50-219ENST00000495039 A0A0U1RQS6 177 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 GABARAPO95166 117 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 SLC25A14O95258 325 aaPredicted RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 UTS2O95399 124 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 RAB3DO95716 219 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 IGKV1-17P01599 117 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 SERPIND1P05546 499 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 GNAO1P09471 354 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 CISD3P0C7P0 127 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 FOLR1P15328 257 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 HRH1P35367 487 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 NAMPTP43490 491 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 RFX3P48380 749 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 GPX6P59796 221 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 NUTF2P61970 127 aaKnown RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 RAP1AP62834 184 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 BST1Q10588 318 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 BST2Q10589 180 aaKnown RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 ERCC8Q13216 396 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 CCNJQ5T5M9 372 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 PRAMEF5Q5TYX0 476 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 PRAMEF6Q5VXH4 476 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 NCCRP1Q6ZVX7 275 aaPredicted RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 NECAB1Q8N987 351 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 OR13C2Q8NGS9 318 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 SYNPRQ8TBG9 265 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 CXorf40AQ8TE69 158 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms