RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 S100A16Q96FQ6 103 aaKnown RBP14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 LILRA5A6NI73 299 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 ATP6V1G2-DDX39BF2Z307 99 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 ARPC3O15145 178 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 IL33O95760 270 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 DDAH2O95865 285 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 CD14P08571 375 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 DPP4P27487 766 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 H2BFSP57053 126 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 SERTAD2Q14140 314 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 CHRDL2Q6WN34 429 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 C9orf40Q8IXQ3 194 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 FAM71CQ8NEG0 241 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 THAP3Q8WTV1 239 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 AMELYQ99218 206 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 GRHPRQ9UBQ7 328 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF230Q9UIE0 474 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 SERPINA3P01011 423 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 RRASP10301 218 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 RORAP35398 523 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 NUDT1P36639 197 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 PPICP45877 212 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 OR10K2Q6IF99 312 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 LIN54Q6MZP7 749 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 PWWP2BQ6NUJ5 590 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF676Q8N7Q3 588 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF721Q8TF20 911 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 LCORQ96JN0 433 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 MRM2Q9UI43 246 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 FOXJ3Q9UPW0 622 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 HIF3AQ9Y2N7 669 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 TRAV18A0A075B6X5 111 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 ANXA2P2A6NMY6 339 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 H0YIG0 161 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 AKR7A3O95154 331 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 PLATP00750 562 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 ANXA2P07355 339 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 TAS2R20P59543 309 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 C14orf28Q4W4Y0 310 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 C4orf46Q504U0 113 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 OR7E24Q6IFN5 339 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 TMEM81Q6P7N7 255 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 STAC2Q6ZMT1 411 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 PM20D2Q8IYS1 436 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 LRRC75AQ8NAA5 344 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 PLPP7Q8NBV4 271 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 OR51S1Q8NGJ8 323 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 TNFAIP8L1Q8WVP5 186 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 TTYH1Q9H313 450 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 MKL2Q9ULH7 1088 aa14.94□□□□□ -0.02
CCDC88B-210ENST00000494566 TRAV1-2A0A0B4J238 106 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 MBTPS2O43462 519 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 CDC40O60508 579 aaKnown RBP eCLIP14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 ASAH2BP0C7U1 165 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 IL12BP29460 328 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 SORDQ00796 357 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 DMRTC1Q5HYR2 192 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 CLLU1Q5K131 121 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 TMEM205Q6UW68 189 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 MDGA2Q7Z553 956 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 KDM8Q8N371 416 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 OR6M1Q8NGM8 313 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 TMEM106AQ96A25 262 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 ADIPOR1Q96A54 375 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 PTDSS2Q9BVG9 487 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 FRRS1LQ9P0K9 344 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 FBXO4Q9UKT5 387 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 M0QYG6 137 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 CREBL2O60519 120 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF217O75362 1048 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 SRFP11831 508 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 BCKDHBP21953 392 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 NFYAP23511 347 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 SDHAP31040 664 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 LRRN1Q6UXK5 716 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 DUSP19Q8WTR2 217 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 ZDHHC12Q96GR4 267 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC2A4RGQ9NR83 387 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 CTSFQ9UBX1 484 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF281Q9Y2X9 895 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 CCSO14618 274 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 PNMTP11086 282 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 GTF2F2P13984 249 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 CSF2RBP32927 897 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 ATRAIDQ6UW56 229 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 OR4C16Q8NGL9 310 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 ADAMTS18Q8TE60 1221 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 TTC9Q92623 222 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 NARS2Q96I59 477 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC46A1Q96NT5 459 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 NPAS1Q99742 590 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC22A13Q9Y226 551 aa14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 FARSAQ9Y285 508 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-210ENST00000494566 LMO7DNF2Z398 122 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 H3BMH7 237 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 H3BUI4 141 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 AIPO00170 330 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 APOC3P02656 99 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 IGKV3-11P04433 115 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms