RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 SLC3A1Q07837 685 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 BAMBIQ13145 260 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 FADDQ13158 208 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 TBC1D28Q2M2D7 210 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 ARMCX4Q5H9R4 360 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 TMEM53Q6P2H8 277 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 DHRS4L2Q6PKH6 230 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 C9orf139Q6ZV77 190 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 COMTD1Q86VU5 262 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 CPEB3Q8NE35 698 aaKnown RBP6.93□□□□□ -1.3
USP39-216ENST00000490193 OR1J2Q8NGS2 313 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 OR6X1Q8NH79 312 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 ST7LQ8TDW4 575 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 GTF3AQ92664 365 aaKnown RBP6.93□□□□□ -1.3
USP39-216ENST00000490193 VPS33AQ96AX1 596 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 DUX5Q96PT3 197 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 ZBTB18Q99592 522 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 ROPN1BQ9BZX4 212 aaPredicted RBP6.93□□□□□ -1.3
USP39-216ENST00000490193 ROPN1Q9HAT0 212 aaPredicted RBP6.93□□□□□ -1.3
USP39-216ENST00000490193 CDH20Q9HBT6 801 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 CGGBP1Q9UFW8 167 aaPredicted RBP6.93□□□□□ -1.3
USP39-216ENST00000490193 AUP1Q9Y679 476 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 WNK1Q9H4A3 2382 aa6.93□□□□□ -1.3
USP39-216ENST00000490193 KMT2CQ8NEZ4 4911 aaKnown RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 A0A0B4J2E0 115 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 A0A1B0GUS0 222 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 A0A1B0GX12 115 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 TRAPPC2LH3BP13 241 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 DHHO43323 396 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 TPD52L2O43399 206 aaKnown RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 FARS2O95363 451 aaKnown RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 ANP32DO95626 131 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 IGHV2-70P01814 119 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 LCKP06239 509 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 CD55P08174 381 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 MMP7P09237 267 aaPredicted RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 PPIAL4GP0DN37 164 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 CCL2P13500 99 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 HOXB9P17482 250 aaPredicted RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 DRD4P21917 467 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 BIDP55957 195 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 ZNF154Q13106 437 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 RGNQ15493 299 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 SLC9A3R2Q15599 337 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 HIST3H3Q16695 136 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 TSTQ16762 297 aaKnown RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 SLC36A2Q495M3 483 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 GTDC1Q4AE62 458 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 TMEM255AQ5JRV8 349 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 LEG1Q6P5S2 330 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 LRFN4Q6PJG9 635 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 BCL6BQ8N143 479 aaPredicted RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 MIER2Q8N344 545 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 OR5J2Q8NH18 312 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 CCL17Q92583 94 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 ZNF566Q969W8 418 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 SLC25A44Q96H78 314 aaPredicted RBP6.92□□□□□ -1.3
USP39-216ENST00000490193 ITCHQ96J02 903 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 SH3GL3Q99963 347 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 LRMDAQ9H2I8 198 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 RAD21L1Q9H4I0 556 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 RMND5AQ9H871 391 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 EVA1AQ9H8M9 152 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 MMP26Q9NRE1 261 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 INSIG2Q9Y5U4 225 aa6.92□□□□□ -1.3
USP39-216ENST00000490193 RYR3Q15413 4870 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 IQCMA0A1B0GVH7 501 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 ISPDA4D126 451 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 WDR91A4D1P6 747 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 ZSCAN5BA6NJL1 495 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 LRRN3E7EW58 273 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 F5H0A9 414 aaPredicted RBP6.91□□□□□ -1.3
USP39-216ENST00000490193 H3BSA7 217 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 TPST2O60704 377 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 ICMTO60725 284 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 SLC22A3O75751 556 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 PGA4P0DJD7 388 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 PGA3P0DJD8 388 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 ADORA3P0DMS8 318 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 IDO1P14902 403 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 MDKP21741 143 aaPredicted RBP6.91□□□□□ -1.3
USP39-216ENST00000490193 AHCYP23526 432 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 LIPAP38571 399 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 MTNR1AP48039 350 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 SLC6A9P48067 706 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 ZNF133P52736 654 aaPredicted RBP6.91□□□□□ -1.3
USP39-216ENST00000490193 NCALDP61601 193 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 PLP2Q04941 152 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 OR1Q1Q15612 314 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 ZNF718Q3SXZ3 478 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 TMEM155Q4W5P6 130 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 MBNL2Q5VZF2 373 aaKnown RBP6.91□□□□□ -1.3
USP39-216ENST00000490193 LINC00114Q6XXX2 140 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 SLC35D2Q76EJ3 337 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 SLC16A14Q7RTX9 510 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 C1orf174Q8IYL3 243 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 SPICQ8N5J4 248 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 RBM15BQ8NDT2 890 aaKnown RBP6.91□□□□□ -1.3
USP39-216ENST00000490193 OR4K5Q8NGD3 323 aa6.91□□□□□ -1.3
USP39-216ENST00000490193 OR1J1Q8NGS3 322 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms