RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RUNX3Q13761 415 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 RCAN2Q14206 197 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 GRK1Q15835 563 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 WSCD2Q2TBF2 565 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 CT45A2Q5DJT8 189 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 DDI2Q5TDH0 399 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 TRIQKQ629K1 86 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 LRRC66Q68CR7 880 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 ELP2Q6IA86 826 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 EIF3MQ7L2H7 374 aaKnown RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 C16orf62Q7Z3J2 963 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 SNX20Q7Z614 316 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 CPNE9Q8IYJ1 553 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 DAW1Q8N136 415 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 CHDHQ8NE62 594 aaPredicted RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 LPCAT1Q8NF37 534 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 OR6T1Q8NGN1 323 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 OR5H6Q8NGV6 325 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 DEDD2Q8WXF8 326 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 HAS2Q92819 552 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 PNPLA2Q96AD5 504 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 SLCO4A1Q96BD0 722 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 TMEM80Q96HE8 168 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 ARL5BQ96KC2 179 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 HSFY1Q96LI6 401 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 ERMAPQ96PL5 475 aaPredicted RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 TRNT1Q96Q11 434 aaKnown RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 PDCD10Q9BUL8 212 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 ERVK-6Q9BXR3 956 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 CACNG6Q9BXT2 260 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 GABARAPL1Q9H0R8 117 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 POMKQ9H5K3 350 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 ASB7Q9H672 318 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 WDR55Q9H6Y2 383 aaPredicted RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 MYOZ2Q9NPC6 264 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 IMP3Q9NV31 184 aaKnown RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 TAS2R7Q9NYW3 318 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 TECRQ9NZ01 308 aaKnown RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 CNOT2Q9NZN8 540 aaKnown RBP4.48□□□□□ -1.69
USP40-213ENST00000483216 KIF25Q9UIL4 384 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 GSTK1Q9Y2Q3 226 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 SLC6A5Q9Y345 797 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 GMPPBQ9Y5P6 360 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 GON4LQ3T8J9 2241 aa4.48□□□□□ -1.69
USP40-213ENST00000483216 DOCK1Q14185 1865 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 A0A0A6YYC8 382 aaPredicted RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 I3L1I5 382 aaPredicted RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 SLC9A3R1O14745 358 aaPredicted RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 AZIN1O14977 448 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 PRKYO43930 277 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 DUSP11O75319 330 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 BANF1O75531 89 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SERPINA1P01009 418 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 IFNA14P01570 189 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 APOC1P02654 83 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 THY1P04216 161 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 GNAO1P09471 354 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 OR56A5P0C7T3 313 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 UROSP10746 265 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SLC2A3P11169 496 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ANXA8P13928 327 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ATP6V1B2P21281 511 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 PCMT1P22061 227 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 CYP2F1P24903 491 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SDC2P34741 201 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ALDH3B1P43353 468 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 CCT3P49368 545 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 POLR2JP52435 117 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 ACLYP53396 1101 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 RAG2P55895 527 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 CDC42P60953 191 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 PPIAP62937 165 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 ERVK-8P63133 956 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 OGDHQ02218 1023 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 RGS1Q08116 209 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 INCA1Q0VD86 236 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 HEPACAMQ14CZ8 416 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 C17orf58Q2M2W7 97 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ATP6AP1LQ52LC2 224 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 CLLU1Q5K131 121 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 MEDAGQ5VYS4 303 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 WDR25Q64LD2 544 aaPredicted RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 OR6B2Q6IFH4 312 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SCYL2Q6P3W7 929 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ARSKQ6UWY0 536 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 RNF165Q6ZSG1 346 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ARMCX2Q7L311 632 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 PID1Q7Z2X4 250 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 BNIPLQ7Z465 357 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 UNC93AQ86WB7 457 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 STX12Q86Y82 276 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 CENPLQ8N0S6 344 aaPredicted RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 NATD1Q8N6N6 113 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 RNF148Q8N7C7 305 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 CLDN22Q8N7P3 220 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 OR4A15Q8NGL6 344 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 STAG3L4Q8TBR4 150 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 C15orf40Q8WUR7 153 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ACOT12Q8WYK0 555 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SLC7A6Q92536 515 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms