RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 KHDRBS3O75525 346 aaKnown RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 UPK3AO75631 287 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 TOXO94900 526 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 GPANK1O95872 356 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 SCG5P05408 212 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 TFAP2AP05549 437 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 YES1P07947 543 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 LIMS3P0CW19 117 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 LIMS4P0CW20 117 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 CRABP1P29762 137 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 AGTR1P30556 359 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 ALDH3B2P48448 385 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 CSNK1A1P48729 337 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 CLRN1P58418 232 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 ZNF85Q03923 595 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 BLMHQ13867 455 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 KLHL22Q53GT1 634 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 THEM4Q5T1C6 240 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 LCN1P1Q5VSP4 162 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 CARD17Q5XLA6 110 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 TMEM154Q6P9G4 183 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 RPTNQ6XPR3 784 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 CHMP1BQ7LBR1 199 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 AAED1Q7RTV5 226 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 NUFIP2Q7Z417 695 aaKnown RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 RFLNBQ8N5W9 214 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 POMGNT2Q8NAT1 580 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 ZNF511Q8NB15 262 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 ZNF485Q8NCK3 441 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 PROKR2Q8NFJ6 384 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 SLC26A10Q8NG04 563 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 OR51G2Q8NGK0 314 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 MBD3L2Q8NHZ7 208 aaPredicted RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 FNDC8Q8TC99 324 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 MYDGFQ969H8 173 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 INTS12Q96CB8 462 aaKnown RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 TMEM80Q96HE8 168 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 LINC00470Q9BZP3 86 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 CALHM2Q9HA72 323 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 GLTPQ9NZD2 209 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 EMC3Q9P0I2 261 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 COA3Q9Y2R0 106 aaPredicted RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 LSM2Q9Y333 95 aaKnown RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 COMMD3-BMI1R4GMX3 469 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 ATRXP46100 2492 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 DNAJC13O75165 2243 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 PRRC2CQ9Y520 2896 aaKnown RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 TVP23AA6NH52 213 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 PRR32B1ATL7 298 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 DHHO43323 396 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 SELENOFO60613 162 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 SLC43A1O75387 559 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 MPZL1O95297 269 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 RAB36O95755 333 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 FADS2O95864 444 aaKnown RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 PTHP01270 115 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 TPOP07202 933 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 MRPL3P09001 348 aaKnown RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 QDPRP09417 244 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 EDN3P14138 238 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 GABRA1P14867 456 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 ATP6V1B1P15313 513 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 JUNBP17275 347 aaPredicted RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 EEF1B2P24534 225 aaKnown RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 DCKP27707 260 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 PTGER4P35408 488 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 CD79BP40259 229 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 MAP2K4P45985 399 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 CENPAP49450 140 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 ETV1P50549 477 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 RPS7P62081 194 aaKnown RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 EMX1Q04741 257 aaPredicted RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 POU4F2Q12837 409 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 TBCEQ15813 527 aaPredicted RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 KCNMB1Q16558 191 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 PCK2Q16822 640 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 ST3GAL2Q16842 350 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 C1orf185Q5T7R7 199 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 RIPPLY2Q5TAB7 128 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 TSPO2Q5TGU0 170 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 ZNF585AQ6P3V2 769 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 DNM1P34Q6PK57 102 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 KCTD8Q6ZWB6 473 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 SSX6Q7RTT6 188 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 SLC16A9Q7RTY1 509 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 CD163Q86VB7 1156 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 CDC20BQ86Y33 519 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 DOLPP1Q86YN1 238 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 STX19Q8N4C7 294 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 RPRMLQ8N4K4 120 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 OR6K6Q8NGW6 343 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 SMAP2Q8WU79 429 aaPredicted RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 NABP1Q96AH0 204 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 ZNF837Q96EG3 531 aaPredicted RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 GMPPAQ96IJ6 420 aaPredicted RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 FOXN4Q96NZ1 517 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 RBP7Q96R05 134 aa7.28□□□□□ -1.24
USP4-210ENST00000483212 CNN2Q99439 309 aaKnown RBP7.28□□□□□ -1.24
USP4-210ENST00000483212 PRRG4Q9BZD6 226 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms