RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CD47Q08722 323 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 TOP3AQ13472 1001 aaPredicted RBP12.01□□□□□ -0.49
USP4-206ENST00000461553 FXNQ16595 210 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 TBC1D28Q2M2D7 210 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 ALG10Q5BKT4 473 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 RGS7BPQ6MZT1 257 aaPredicted RBP12.01□□□□□ -0.49
USP4-206ENST00000461553 OFCC1Q8IZS5 231 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 ZCCHC24Q8N2G6 241 aaKnown RBP12.01□□□□□ -0.49
USP4-206ENST00000461553 ZNF786Q8N393 782 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 SYT14Q8NB59 555 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 RBM15BQ8NDT2 890 aaKnown RBP12.01□□□□□ -0.49
USP4-206ENST00000461553 MOSPD2Q8NHP6 518 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 FGFBP3Q8TAT2 258 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 UBASH3BQ8TF42 649 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 LIPHQ8WWY8 451 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 GEMIN6Q8WXD5 167 aaKnown RBP12.01□□□□□ -0.49
USP4-206ENST00000461553 SEPHS2Q99611 448 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 BEX2Q9BXY8 128 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 KCNN2Q9H2S1 579 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 MS4A5Q9H3V2 200 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 CMTM6Q9NX76 183 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 ZNF346Q9UL40 294 aaKnown RBP12.01□□□□□ -0.49
USP4-206ENST00000461553 FZR1Q9UM11 496 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 A4GNTQ9UNA3 340 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 STAB1Q9NY15 2570 aa12.01□□□□□ -0.49
USP4-206ENST00000461553 FBN1P35555 2871 aaKnown RBP12.01□□□□□ -0.49
USP4-206ENST00000461553 IQCMA0A1B0GVH7 501 aa12□□□□□ -0.49
USP4-206ENST00000461553 HTR3EA5X5Y0 456 aa12□□□□□ -0.49
USP4-206ENST00000461553 GSTA4O15217 222 aa12□□□□□ -0.49
USP4-206ENST00000461553 CCDC22O60826 627 aa12□□□□□ -0.49
USP4-206ENST00000461553 SLC2A10O95528 541 aa12□□□□□ -0.49
USP4-206ENST00000461553 ZNF682O95780 498 aa12□□□□□ -0.49
USP4-206ENST00000461553 FAM157BP0CG42 384 aa12□□□□□ -0.49
USP4-206ENST00000461553 SAGP10523 405 aaPredicted RBP12□□□□□ -0.49
USP4-206ENST00000461553 COX4I1P13073 169 aa12□□□□□ -0.49
USP4-206ENST00000461553 IFI30P13284 250 aa12□□□□□ -0.49
USP4-206ENST00000461553 HNF1AP20823 631 aa12□□□□□ -0.49
USP4-206ENST00000461553 IGFBP5P24593 272 aa12□□□□□ -0.49
USP4-206ENST00000461553 MDH1P40925 334 aaKnown RBP12□□□□□ -0.49
USP4-206ENST00000461553 ALDH3B1P43353 468 aa12□□□□□ -0.49
USP4-206ENST00000461553 SLC7A2P52569 658 aa12□□□□□ -0.49
USP4-206ENST00000461553 HSF2Q03933 536 aa12□□□□□ -0.49
USP4-206ENST00000461553 PLP2Q04941 152 aa12□□□□□ -0.49
USP4-206ENST00000461553 LIPEQ05469 1076 aa12□□□□□ -0.49
USP4-206ENST00000461553 TAF11Q15544 211 aa12□□□□□ -0.49
USP4-206ENST00000461553 HIST3H3Q16695 136 aa12□□□□□ -0.49
USP4-206ENST00000461553 MSMPQ1L6U9 139 aa12□□□□□ -0.49
USP4-206ENST00000461553 C10orf128Q5T292 105 aa12□□□□□ -0.49
USP4-206ENST00000461553 VTCN1Q7Z7D3 282 aa12□□□□□ -0.49
USP4-206ENST00000461553 OR1J2Q8NGS2 313 aa12□□□□□ -0.49
USP4-206ENST00000461553 MSI2Q96DH6 328 aaKnown RBP12□□□□□ -0.49
USP4-206ENST00000461553 BPIFA2Q96DR5 249 aa12□□□□□ -0.49
USP4-206ENST00000461553 FNDC11Q9BVV2 318 aa12□□□□□ -0.49
USP4-206ENST00000461553 MRPL13Q9BYD1 178 aaKnown RBP12□□□□□ -0.49
USP4-206ENST00000461553 LRMDAQ9H2I8 198 aa12□□□□□ -0.49
USP4-206ENST00000461553 OR51B6Q9H340 312 aa12□□□□□ -0.49
USP4-206ENST00000461553 TXNIPQ9H3M7 391 aa12□□□□□ -0.49
USP4-206ENST00000461553 SMURF2Q9HAU4 748 aa12□□□□□ -0.49
USP4-206ENST00000461553 CCNB1IP1Q9NPC3 277 aa12□□□□□ -0.49
USP4-206ENST00000461553 REV1Q9UBZ9 1251 aa12□□□□□ -0.49
USP4-206ENST00000461553 HIF3AQ9Y2N7 669 aa12□□□□□ -0.49
USP4-206ENST00000461553 CXCR6O00574 342 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 MGRN1O60291 552 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 SNAP29O95721 258 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 IGHMP01871 453 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 TSPAN19P0C672 248 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 APLNRP35414 380 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 YAP1P46937 504 aaKnown RBP11.99□□□□□ -0.49
USP4-206ENST00000461553 NUDT2P50583 147 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 ZNF133P52736 654 aaPredicted RBP11.99□□□□□ -0.49
USP4-206ENST00000461553 SELENOVP59797 346 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 MAD2L1BPQ15013 274 aaPredicted RBP11.99□□□□□ -0.49
USP4-206ENST00000461553 TRAM2Q15035 370 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 NKPD1Q17RQ9 610 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 IFI44LQ53G44 452 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 ARMC4Q5T2S8 1044 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 FAM205BPQ63HN1 556 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 NRMQ8IXM6 262 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 SLC15A3Q8IY34 581 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 LRRC18Q8N456 261 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 SNX33Q8WV41 574 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 HDAC2Q92769 488 aaKnown RBP11.99□□□□□ -0.49
USP4-206ENST00000461553 SNX18Q96RF0 628 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 HOPXQ9BPY8 73 aaPredicted RBP11.99□□□□□ -0.49
USP4-206ENST00000461553 ALG12Q9BV10 488 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 BCL2L14Q9BZR8 327 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 MYEF2Q9P2K5 600 aaKnown RBP11.99□□□□□ -0.49
USP4-206ENST00000461553 DUSP13Q9UII6 198 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 GPR160Q9UJ42 338 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 TANC2Q9HCD6 1990 aa11.99□□□□□ -0.49
USP4-206ENST00000461553 LRP5LA4QPB2 252 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 NME4O00746 187 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 NDUFAB1O14561 156 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 LCKP06239 509 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 IGFBP1P08833 259 aaPredicted RBP11.98□□□□□ -0.49
USP4-206ENST00000461553 TACSTD2P09758 323 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 CCL2P13500 99 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 SRD5A1P18405 259 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 APEX1P27695 318 aaKnown RBP11.98□□□□□ -0.49
USP4-206ENST00000461553 KLF3P57682 345 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms