RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 OR5W2Q8NH69 310 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 FRZBQ92765 325 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 P2RX4Q99571 388 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 CHAC1Q9BUX1 264 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 GCOM2Q9BZD3 368 aaPredicted RBP2.28□□□□□ -2.04
USP40-209ENST00000452724 MRPL37Q9BZE1 423 aaKnown RBP2.28□□□□□ -2.04
USP40-209ENST00000452724 RPP21Q9H633 154 aaKnown RBP2.28□□□□□ -2.04
USP40-209ENST00000452724 ZNF430Q9H8G1 570 aaPredicted RBP2.28□□□□□ -2.04
USP40-209ENST00000452724 ZNF222Q9UK12 451 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 TET2Q6N021 2002 aaPredicted RBP2.28□□□□□ -2.04
USP40-209ENST00000452724 A0A1B0GVX0 72 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 A0A1W2PP18 115 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 B4GALT5O43286 388 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 UTS2O95399 124 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 RHOXF2BP0C7M4 288 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 CALM1P0DP23 149 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 CALM2P0DP24 149 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 CALM3P0DP25 149 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 FOLR1P15328 257 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 IFNA8P32881 189 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 HRH1P35367 487 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 CRYBB2P43320 205 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 ERCC8Q13216 396 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 MOBPQ13875 183 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 SHHQ15465 462 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 POU2AF1Q16633 256 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 ABCA11PQ4W5N1 156 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 NANOGP8Q6NSW7 305 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 NCCRP1Q6ZVX7 275 aaPredicted RBP2.27□□□□□ -2.05
USP40-209ENST00000452724 HSD17B11Q8NBQ5 300 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 OR4S2Q8NH73 311 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 NT5C3BQ969T7 300 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 TCHPQ9BT92 498 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 ZNF629Q9UEG4 869 aaPredicted RBP2.27□□□□□ -2.05
USP40-209ENST00000452724 OPN4Q9UHM6 478 aa2.27□□□□□ -2.05
USP40-209ENST00000452724 IGSF9BQ9UPX0 1349 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 IGHV3-74A0A0B4J1X5 117 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 A0A0U1RQS6 177 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 SPRR5A0A1B0GTR4 108 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 BET1O15155 118 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 FGGP02679 453 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 FABP3P05413 133 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 SERPIND1P05546 499 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 CISD3P0C7P0 127 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 MCF2P10911 925 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 CASP14P31944 242 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 GPX6P59796 221 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 PLP1P60201 277 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 NUTF2P61970 127 aaKnown RBP2.26□□□□□ -2.05
USP40-209ENST00000452724 RAP1AP62834 184 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 MRPS22P82650 360 aaKnown RBP2.26□□□□□ -2.05
USP40-209ENST00000452724 BST1Q10588 318 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 BST2Q10589 180 aaKnown RBP2.26□□□□□ -2.05
USP40-209ENST00000452724 CLINT1Q14677 625 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 GINS1Q14691 196 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 TGFBIQ15582 683 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 DUX4L9Q6RFH8 374 aaPredicted RBP2.26□□□□□ -2.05
USP40-209ENST00000452724 CCDC73Q6ZRK6 1079 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 OAFQ86UD1 273 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 OR2L3Q8NG85 312 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 LKAAEAR1Q8TD35 194 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 PIBF1Q8WXW3 757 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 FAM3DQ96BQ1 224 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 TUBGCP3Q96CW5 907 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 PIK3IP1Q96FE7 263 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 PDXPQ96GD0 296 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 SPIN2AQ99865 258 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 SPIN2BQ9BPZ2 258 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 SCRT1Q9BWW7 348 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 RSPO3Q9BXY4 272 aaPredicted RBP2.26□□□□□ -2.05
USP40-209ENST00000452724 ISYNA1Q9NPH2 558 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 ETNK2Q9NVF9 386 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 KLHL28Q9NXS3 571 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 CTNNA3Q9UI47 895 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 MRPS18BQ9Y676 258 aaKnown RBP2.26□□□□□ -2.05
USP40-209ENST00000452724 ATAD2BQ9ULI0 1458 aa2.26□□□□□ -2.05
USP40-209ENST00000452724 F6UB75 175 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 PPP1R2P9O14990 202 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 GABARAPO95166 117 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 SERPINA3P01011 423 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 GNAO1P09471 354 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 CT62P0C5K7 136 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 PSMC3P17980 439 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 NCF2P19878 526 aaPredicted RBP2.25□□□□□ -2.05
USP40-209ENST00000452724 PTMSP20962 102 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 CDKN2BP42772 138 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 NAMPTP43490 491 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 TCP10Q12799 353 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 STK11Q15831 433 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 MAJINQ3KP22 176 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 PRAMEF5Q5TYX0 476 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 PRAMEF6Q5VXH4 476 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 ASCL5Q7RTU5 278 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 HDDC2Q7Z4H3 204 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 BIVMQ86UB2 503 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 UBE2J2Q8N2K1 259 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 EID2Q8N6I1 236 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 OR13C2Q8NGS9 318 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 OR10R2Q8NGX6 335 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 RHEBL1Q8TAI7 183 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms