RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 APOL4Q9BPW4 351 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 RERGLQ9H628 205 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 SRA1Q9HD15 236 aaKnown RBP13.9□□□□□ -0.18
USP40-206ENST00000443711 RPRD1BQ9NQG5 326 aaKnown RBP13.9□□□□□ -0.18
USP40-206ENST00000443711 TAS2R16Q9NYV7 291 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 FKBP7Q9Y680 259 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 SPTBN1Q01082 2364 aaKnown RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 CACNA1CQ13936 2221 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 NKX2-6A6NCS4 301 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 WIPF3A6NGB9 483 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 TLX2O43763 284 aaPredicted RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 PRKYO43930 277 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 COX5AP20674 150 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 IGHV1-2P23083 117 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 CD79BP40259 229 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 SH3BGRP55822 239 aaPredicted RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 ARF1P84077 181 aaKnown RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 SFRP5Q5T4F7 317 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 C9orf135Q5VTT2 229 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 CXXC5Q7LFL8 322 aaKnown RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 CXorf67Q86X51 503 aaPredicted RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 CPOQ8IVL8 374 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 OR6V1Q8N148 313 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 ZNF433Q8N7K0 673 aaPredicted RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 TMEM163Q8TC26 289 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 NSMAFQ92636 917 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 RNASE6Q93091 150 aaKnown RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 PTP4A1Q93096 173 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 ZNF837Q96EG3 531 aaPredicted RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 IL4I1Q96RQ9 567 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 HDHD5Q9BXW7 423 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 NMNAT2Q9BZQ4 307 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 B9D1Q9UPM9 204 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 GPR52Q9Y2T5 361 aa13.89□□□□□ -0.19
USP40-206ENST00000443711 UBR5O95071 2799 aaPredicted RBP13.89□□□□□ -0.19
USP40-206ENST00000443711 IGKV1D-43A0A0B4J1Z2 117 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 CIB4A0PJX0 185 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 FAM183AA6NL82 134 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 ZNF99A8MXY4 864 aaPredicted RBP13.88□□□□□ -0.19
USP40-206ENST00000443711 MPZL2O60487 215 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 ITGA5P08648 1049 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 CTLA4P16410 223 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 GUCA1AP43080 201 aaPredicted RBP13.88□□□□□ -0.19
USP40-206ENST00000443711 FOXG1P55316 489 aaPredicted RBP13.88□□□□□ -0.19
USP40-206ENST00000443711 IL18R1Q13478 541 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 CDSNQ15517 529 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 PLBD1Q6P4A8 553 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 ZBTB46Q86UZ6 589 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 FAM26EQ8N5C1 309 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 SETD9Q8NE22 299 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 OR9Q1Q8NGQ5 310 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 TFAP2CQ92754 450 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 TSSK2Q96PF2 358 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 FOXB1Q99853 325 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 MED20Q9H944 212 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 HINT3Q9NQE9 182 aaKnown RBP13.88□□□□□ -0.19
USP40-206ENST00000443711 GALNT8Q9NY28 637 aa13.88□□□□□ -0.19
USP40-206ENST00000443711 H2AFY2Q9P0M6 372 aaPredicted RBP13.88□□□□□ -0.19
USP40-206ENST00000443711 FLNCQ14315 2725 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 HCFC1P51610 2035 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 IGLV1-36A0A0B4J1U3 117 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 C16orf97H3BN30 126 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 M0R129 80 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 DCTN6O00399 190 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 LYZL6O75951 148 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 SPI1P17947 270 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 PSMB1P20618 241 aaKnown RBP13.87□□□□□ -0.19
USP40-206ENST00000443711 LAP3P28838 519 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 CENPAP49450 140 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 SNRPGP62308 76 aaKnown RBP13.87□□□□□ -0.19
USP40-206ENST00000443711 SRSF1Q07955 248 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP40-206ENST00000443711 FAM27E3Q08E93 113 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 ETFDHQ16134 617 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 C6orf52Q5T4I8 152 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 OR7E24Q6IFN5 339 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 ANKRD16Q6P6B7 361 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 STAC2Q6ZMT1 411 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 BHLHA15Q7RTS1 189 aaPredicted RBP13.87□□□□□ -0.19
USP40-206ENST00000443711 C1orf162Q8NEQ5 155 aaPredicted RBP13.87□□□□□ -0.19
USP40-206ENST00000443711 PROKR2Q8NFJ6 384 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 STEAP2Q8NFT2 490 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 SSC4DQ8WTU2 575 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 KISS1RQ969F8 398 aaPredicted RBP13.87□□□□□ -0.19
USP40-206ENST00000443711 UBE2FQ969M7 185 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 HCAR1Q9BXC0 346 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 RACGAP1Q9H0H5 632 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 SEC61A2Q9H9S3 476 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 ZNF226Q9NYT6 803 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 MOKQ9UQ07 419 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 COA3Q9Y2R0 106 aaPredicted RBP13.87□□□□□ -0.19
USP40-206ENST00000443711 UGT2A1Q9Y4X1 527 aa13.87□□□□□ -0.19
USP40-206ENST00000443711 A0A1W2PPL8 197 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 CLEC18AA5D8T8 446 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 PRODHO43272 600 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 CLIC3O95833 236 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 NPR2P20594 1047 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 IL32P24001 234 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 PYCR1P32322 319 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 BLVRAP53004 296 aa13.86□□□□□ -0.19
USP40-206ENST00000443711 MRPS34P82930 218 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms